Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1182016Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
    consists of two intertwined (sub)domains related by pseudo dyad; duplication
    3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
  4. 1182017Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families) (S)
    the constituent families form similar dimers
  5. 1182018Family c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases [53660] (4 proteins)
    the active site is between the two identical subunits
  6. 1182121Protein automated matches [190072] (15 species)
    not a true protein

Species:

  1. 1182122Acidithiobacillus thiooxidans [TaxId:930] [187607] (1 PDB entry)
  2. 1182127Archaeoglobus fulgidus [TaxId:2234] [187335] (1 PDB entry)
  3. 1182130Bacillus coagulans [TaxId:1398] [186792] (2 PDB entries)
    1. Domains for 1v53:
      1. 1182131Domain d1v53a_: 1v53 A: [119836]
        automated match to d2ayqb_
      2. 1182132Domain d1v53b_: 1v53 B: [119837]
        automated match to d2ayqb_
    2. Domains for 1v5b:
      1. 1182133Domain d1v5ba_: 1v5b A: [161828]
        automated match to d2ayqb_
        complexed with so4; mutant
      2. 1182134Domain d1v5bb_: 1v5b B: [161829]
        automated match to d2ayqb_
        complexed with so4; mutant
      3. 1182135Domain d1v5bc_: 1v5b C: [161830]
        automated match to d2ayqb_
        complexed with so4; mutant
      4. 1182136Domain d1v5bd_: 1v5b D: [161831]
        automated match to d2ayqb_
        complexed with so4; mutant
      5. 1182137Domain d1v5be_: 1v5b E: [161832]
        automated match to d2ayqb_
        complexed with so4; mutant
      6. 1182138Domain d1v5bf_: 1v5b F: [161833]
        automated match to d2ayqb_
        complexed with so4; mutant
      7. 1182139Domain d1v5bg_: 1v5b G: [161834]
        automated match to d2ayqb_
        complexed with so4; mutant
      8. 1182140Domain d1v5bh_: 1v5b H: [161835]
        automated match to d2ayqb_
        complexed with so4; mutant
  4. 1182141Burkholderia pseudomallei [TaxId:28450] [188497] (1 PDB entry)
  5. 1182143Burkholderia thailandensis [TaxId:271848] [193254] (1 PDB entry)
  6. 1182145Campylobacter jejuni [TaxId:197] [189804] (2 PDB entries)
    1. Domain for 3udo:
    2. Domains for 3udu:
      1. 1182146Domain d3udua_: 3udu A: [186239]
        automated match to d1cm7a_
        complexed with cl, edo
      2. 1182147Domain d3udub_: 3udu B: [186240]
        automated match to d1cm7a_
        complexed with cl, edo
      3. 1182148Domain d3uduc_: 3udu C: [186241]
        automated match to d1cm7a_
        complexed with cl, edo
      4. 1182149Domain d3udud_: 3udu D: [186242]
        automated match to d1cm7a_
        complexed with cl, edo
      5. 1182150Domain d3udue_: 3udu E: [186243]
        automated match to d1cm7a_
        complexed with cl, edo
      6. 1182151Domain d3uduf_: 3udu F: [186244]
        automated match to d1cm7a_
        complexed with cl, edo
      7. 1182152Domain d3udug_: 3udu G: [186245]
        automated match to d1cm7a_
        complexed with cl, edo
      8. 1182153Domain d3uduh_: 3udu H: [186246]
        automated match to d1cm7a_
        complexed with cl, edo
  7. 1182155Escherichia coli K-12 [TaxId:83333] [189313] (1 PDB entry)
  8. 1182158Escherichia coli [TaxId:562] [193425] (2 PDB entries)
    1. Domain for 4aja:
    2. Domain for 4ajc:
  9. 1182161Escherichia coli [TaxId:833333] [194427] (1 PDB entry)
  10. 1182163Human (Homo sapiens) [TaxId:9606] [189131] (3 PDB entries)
    1. Domains for 3inm:
      1. 1182165Domain d3inma_: 3inm A: [178460]
        automated match to d1t09a_
        protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
      2. 1182166Domain d3inmb_: 3inm B: [178461]
        automated match to d1t09a_
        protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
      3. 1182167Domain d3inmc_: 3inm C: [178462]
        automated match to d1t09a_
        protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
    2. Domains for 3map:
      1. 1182168Domain d3mapa_: 3map A: [180990]
        automated match to d1t09a_
        complexed with ict, nap; mutant
      2. 1182169Domain d3mapb_: 3map B: [180991]
        automated match to d1t09a_
        complexed with ict, nap; mutant
    3. Domain for 4ja8:
  11. 1182170Mouse (Mus musculus) [TaxId:10090] [187557] (2 PDB entries)
    1. Domains for 2cmj:
      1. 1182171Domain d2cmja_: 2cmj A: [163446]
        automated match to d1t09a_
        complexed with nap
      2. 1182172Domain d2cmjb_: 2cmj B: [163447]
        automated match to d1t09a_
        complexed with nap
    2. Domains for 2cmv:
      1. 1182173Domain d2cmva_: 2cmv A: [163454]
        automated match to d1t09a_
        complexed with cd, flc, nap
      2. 1182174Domain d2cmvb_: 2cmv B: [163455]
        automated match to d1t09a_
        complexed with cd, flc, nap
  12. Mycobacterium tuberculosis [TaxId:1773] [193947] (1 PDB entry)
  13. 1182177Shewanella oneidensis, [TaxId:211586] [194175] (3 PDB entries)
    1. Domain for 3vl3:
    2. Domain for 3vmj:
    3. Domain for 3vml:
  14. 1182181Thermus thermophilus [TaxId:274] [189081] (5 PDB entries)
    1. Domain for 2y3z:
    2. Domains for 2y40:
      1. 1182189Domain d2y40a_: 2y40 A: [170581]
        automated match to d1g2ua_
        complexed with mn
      2. 1182190Domain d2y40b_: 2y40 B: [170582]
        automated match to d1g2ua_
        complexed with mn
    3. Domains for 2y41:
      1. 1182183Domain d2y41a_: 2y41 A: [170583]
        automated match to d1g2ua_
        complexed with ipm, mn
      2. 1182184Domain d2y41b_: 2y41 B: [170584]
        automated match to d1g2ua_
        complexed with ipm, mn
    4. Domains for 2y42:
      1. 1182185Domain d2y42a_: 2y42 A: [170585]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
      2. 1182186Domain d2y42b_: 2y42 B: [170586]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
      3. 1182187Domain d2y42c_: 2y42 C: [170587]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
      4. 1182188Domain d2y42d_: 2y42 D: [170588]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
    5. Domain for 2ztw:
  15. 1182192Thermus thermophilus [TaxId:300852] [192453] (1 PDB entry)

More info for Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases

Timeline for Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases: