SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.60: SAM domain-like [47768] (17 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.1: SAM/Pointed domain [47769] (4 families)
Family a.60.1.0: automated matches [191306] (1 protein)
not a true family
Protein automated matches [190031] (3 species)
not a true protein

Species:

Fruit fly (Drosophila melanogaster) [TaxId:7227] [186750] (3 PDB entries)
1. Domain for 1pk1:
  - Domain d1pk1d_: 1pk1 D: [118714]
    Other proteins in same PDB: d1pk1a1, d1pk1b1, d1pk1c_
    automated match to d1kw4a_
2. Domains for 1pk3:
  1. Domain d1pk3b_: 1pk3 B: [118716]
    Other proteins in same PDB: d1pk3a1, d1pk3a2, d1pk3c3
    automated match to d1kw4a_
    complexed with bme
  2. Domain d1pk3c2: 1pk3 C:6-80 [118717]
    Other proteins in same PDB: d1pk3a1, d1pk3a2, d1pk3c3
    automated match to d1kw4a_
    complexed with bme
3. Domains for 5j8y:
  1. Domain d5j8ya1: 5j8y A:803-877 [317548]
    Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
    automated match to d1pk3b_
  2. Domain d5j8yb1: 5j8y B:803-877 [317612]
    Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
    automated match to d1pk3b_
  3. Domain d5j8yc1: 5j8y C:1137-1204 [317539]
    Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
    automated match to d4pzna_
  4. Domain d5j8yd1: 5j8y D:1137-1205 [317565]
    Other proteins in same PDB: d5j8ya2, d5j8yb2, d5j8yc2, d5j8yd2
    automated match to d4pzna_

Human (Homo sapiens) [TaxId:9606] [188353] (24 PDB entries)

Domain for 1x66:
- Domain d1x66a1: 1x66 A:8-92 [264211]
  Other proteins in same PDB: d1x66a2, d1x66a3
  automated match to d2dkxa_
Domain for 2dkx:
- Domain d2dkxa1: 2dkx A:8-90 [241586]
  Other proteins in same PDB: d2dkxa2, d2dkxa3
  automated match to d1lkyb_
Domain for 2e8n:
- Domain d2e8na1: 2e8n A:8-82 [241706]
  Other proteins in same PDB: d2e8na2, d2e8na3
  automated match to d1ucva_
Domain for 2eam:
- Domain d2eama1: 2eam A:8-74 [241710]
  Other proteins in same PDB: d2eama2, d2eama3
  automated match to d1v38a_
Domain for 2ean:
- Domain d2eana1: 2ean A:8-77 [241711]
  Other proteins in same PDB: d2eana2, d2eana3
  automated match to d3bs5b_
Domain for 2eao:
- Domain d2eaoa1: 2eao A:8-93 [241712]
  Other proteins in same PDB: d2eaoa2, d2eaoa3
  automated match to d3h8mb_
Domain for 2k4p:
- Domain d2k4pa_: 2k4p A: [242377]
  automated match to d3h8ma_
Domain for 2ke7:
- Domain d2ke7a_: 2ke7 A: [242477]
  automated match to d3hilb_
Domains for 2kiv:
1. Domain d2kiva1: 2kiv A:1-69 [242531]
  automated match to d1b4fg_
2. Domain d2kiva2: 2kiv A:70-135 [242532]
  automated match to d1b4fg_
Domains for 2kso:
1. Domain d2ksoa_: 2kso A: [242636]
  automated match to d1f0ma_
2. Domain d2ksob_: 2kso B: [242637]
  automated match to d2qkqa_
Domain for 2lmr:
- Domain d2lmra1: 2lmr A:22-101 [242937]
  Other proteins in same PDB: d2lmra2
  automated match to d1v38a_
Domain for 2y9t:
- Domain d2y9ta1: 2y9t A:543-622 [244713]
  Other proteins in same PDB: d2y9ta2
  automated match to d1coka_
  mutant
Domains for 3bq7:
1. Domain d3bq7a1: 3bq7 A:1-67 [172782]
  Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
  automated match to d2f3na1
2. Domain d3bq7b_: 3bq7 B: [172783]
  Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
  automated match to d2f3na1
3. Domain d3bq7c1: 3bq7 C:1-68 [172784]
  Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
  automated match to d2f3na1
4. Domain d3bq7d_: 3bq7 D: [172785]
  Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
  automated match to d2f3na1
5. Domain d3bq7e1: 3bq7 E:1-67 [172786]
  Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
  automated match to d2f3na1
6. Domain d3bq7f_: 3bq7 F: [172787]
  Other proteins in same PDB: d3bq7a2, d3bq7c2, d3bq7e2
  automated match to d2f3na1
Domain for 3bs5:
- Domain d3bs5b_: 3bs5 B: [172803]
  automated match to d1wwva1
Domains for 3h8m:
1. Domain d3h8ma_: 3h8m A: [210909]
  Other proteins in same PDB: d3h8mb2
  automated match to d1b4fb_
2. Domain d3h8mb1: 3h8m B:919-990 [210910]
  Other proteins in same PDB: d3h8mb2
  automated match to d1b4fb_
Domains for 3hil:
1. Domain d3hila_: 3hil A: [211077]
  automated match to d3kkaa_
  complexed with cl, no3
2. Domain d3hilb_: 3hil B: [211078]
  automated match to d3kkaa_
  complexed with cl, no3
Domains for 3kka:
1. Domain d3kkaa_: 3kka A: [196506]
  automated match to d3kkad_
  complexed with cl
2. Domain d3kkab_: 3kka B: [196505]
  automated match to d3kkad_
  complexed with cl
3. Domain d3kkac_: 3kka C: [179398]
  automated match to d1f0ma_
  complexed with cl
4. Domain d3kkad_: 3kka D: [179399]
  automated match to d1f0ma_
  complexed with cl
5. Domain d3kkae_: 3kka E: [179400]
  automated match to d1f0ma_
  complexed with cl
Domains for 3sei:
1. Domain d3seia1: 3sei A:3-71 [249393]
  Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
  automated match to d1b4fg_
  complexed with cl, so4
2. Domain d3seia2: 3sei A:72-138 [249394]
  Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
  automated match to d1b4fg_
  complexed with cl, so4
3. Domain d3seib1: 3sei B:3-71 [249395]
  Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
  automated match to d1b4fg_
  complexed with cl, so4
4. Domain d3seib2: 3sei B:72-138 [249396]
  Other proteins in same PDB: d3seia3, d3seia4, d3seib3, d3seib4
  automated match to d1b4fg_
  complexed with cl, so4
Domains for 3sen:
1. Domain d3sena1: 3sen A:8-74 [265362]
  automated match to d3seia1
  complexed with k
2. Domain d3sena2: 3sen A:75-149 [265363]
  automated match to d3seia2
  complexed with k
3. Domain d3senb1: 3sen B:8-74 [265364]
  automated match to d3seia1
  complexed with k
4. Domain d3senb2: 3sen B:75-146 [265365]
  automated match to d3seia2
  complexed with k
5. Domain d3senc1: 3sen C:8-74 [265366]
  automated match to d3seia1
  complexed with k
6. Domain d3senc2: 3sen C:75-143 [265367]
  automated match to d3seia2
  complexed with k
7. Domain d3send1: 3sen D:8-74 [265368]
  automated match to d3seia1
  complexed with k
8. Domain d3send2: 3sen D:75-144 [265369]
  automated match to d3seia2
  complexed with k
Domains for 4is7:
1. Domain d4is7a1: 4is7 A:21-88 [266462]
  automated match to d3seia1
2. Domain d4is7a2: 4is7 A:89-160 [266463]
  automated match to d3seia2
Domains for 4mhv:
1. Domain d4mhva_: 4mhv A: [236463]
  Other proteins in same PDB: d4mhvb2
  automated match to d1sxda_
  complexed with act, ca, gol
2. Domain d4mhvb1: 4mhv B:76-170 [236462]
  Other proteins in same PDB: d4mhvb2
  automated match to d1sxda_
  complexed with act, ca, gol
Domains for 5l1m:
1. Domain d5l1ma1: 5l1m A:21-88 [321135]
  automated match to d4is7a1
2. Domain d5l1ma2: 5l1m A:89-160 [321136]
  automated match to d4is7a2
Domains for 6luj:
1. Domain d6luja1: 6luj A:459-523 [399936]
  Other proteins in same PDB: d6luja2, d6lujb2, d6lujc2, d6lujd2, d6luje2
  automated match to d1pk1d_
  complexed with so4
2. Domain d6lujb1: 6luj B:459-523 [399919]
  Other proteins in same PDB: d6luja2, d6lujb2, d6lujc2, d6lujd2, d6luje2
  automated match to d1pk1d_
  complexed with so4
3. Domain d6lujc1: 6luj C:459-523 [399974]
  Other proteins in same PDB: d6luja2, d6lujb2, d6lujc2, d6lujd2, d6luje2
  automated match to d1pk1d_
  complexed with so4
4. Domain d6lujd1: 6luj D:459-523 [399926]
  Other proteins in same PDB: d6luja2, d6lujb2, d6lujc2, d6lujd2, d6luje2
  automated match to d1pk1d_
  complexed with so4
5. Domain d6luje1: 6luj E:459-523 [399951]
  Other proteins in same PDB: d6luja2, d6lujb2, d6lujc2, d6lujd2, d6luje2
  automated match to d1pk1d_
  complexed with so4

Domains for 6luk:

Domain d6luka1: 6luk A:459-526 [399954]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukb1: 6luk B:459-526 [399797]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukc1: 6luk C:459-526 [399859]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukd1: 6luk D:459-526 [399862]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6luke1: 6luk E:459-526 [399888]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukf1: 6luk F:459-526 [399784]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukg1: 6luk G:459-526 [399809]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukh1: 6luk H:459-526 [399963]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6luki1: 6luk I:459-526 [399837]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukj1: 6luk J:459-526 [399875]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukk1: 6luk K:459-526 [399841]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukl1: 6luk L:459-526 [399824]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukm1: 6luk M:459-526 [399882]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukn1: 6luk N:459-526 [399846]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6luko1: 6luk O:459-526 [399782]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukp1: 6luk P:459-526 [399922]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukq1: 6luk Q:459-526 [399945]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukr1: 6luk R:459-526 [399891]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6luks1: 6luk S:459-526 [399906]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Domain d6lukt1: 6luk T:459-526 [399884]
Other proteins in same PDB: d6luka2, d6lukb2, d6lukc2, d6lukd2, d6luke2, d6lukf2, d6lukg2, d6lukh2, d6luki2, d6lukj2, d6lukk2, d6lukl2, d6lukm2, d6lukn2, d6luko2, d6lukp2, d6lukq2, d6lukr2, d6luks2, d6lukt2
automated match to d1pk1d_
complexed with so4

Mouse (Mus musculus) [TaxId:10090] [353082] (2 PDB entries)
1. Domains for 5zrx:
  1. Domain d5zrxa1: 5zrx A:1200-1256 [353083]
    Other proteins in same PDB: d5zrxa3, d5zrxb3
    automated match to d1b0xa_
  2. Domain d5zrxa2: 5zrx A:906-970 [353084]
    Other proteins in same PDB: d5zrxa3, d5zrxb3
    automated match to d1b0xa_
  3. Domain d5zrxb1: 5zrx B:1200-1257 [353127]
    Other proteins in same PDB: d5zrxa3, d5zrxb3
    automated match to d1b0xa_
  4. Domain d5zrxb2: 5zrx B:907-969 [353128]
    Other proteins in same PDB: d5zrxa3, d5zrxb3
    automated match to d1b0xa_
2. Domains for 5zrz:
  1. Domain d5zrza_: 5zrz A: [353088]
    Other proteins in same PDB: d5zrzb2
    automated match to d3h8ma_
  2. Domain d5zrzb1: 5zrz B:2-64 [353113]
    Other proteins in same PDB: d5zrzb2
    automated match to d1b4fa_

More info for Protein automated matches from a.60.1.0: automated matches

Timeline for Protein automated matches from a.60.1.0: automated matches:

Protein automated matches from a.60.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from a.60.1.0: automated matches appears in SCOPe 2.07