Class d: Alpha and beta proteins (a+b) [53931] (381 folds) |
Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily) mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix |
Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) duplication: consists of two similar domain swapped with C-terminal strands |
Family d.21.1.1: Diaminopimelate epimerase [54507] (1 protein) automatically mapped to Pfam PF01678 |
Protein Diaminopimelate epimerase [54508] (3 species) |
Escherichia coli K-12 [TaxId:83333] [234868] (2 PDB entries) |
Domain d4ijza1: 4ijz A:1-130 [234869] automated match to d1bwza1 complexed with no3 |
Domain d4ijza2: 4ijz A:131-274 [234872] automated match to d1gqza2 complexed with no3 |
Domain d4ijzb1: 4ijz B:1-130 [234870] automated match to d1bwza1 complexed with no3 |
Domain d4ijzb2: 4ijz B:131-275 [234871] automated match to d1gqza2 complexed with no3 |
Domain d4ik0a1: 4ik0 A:1-130 [234873] automated match to d1bwza1 complexed with iod; mutant |
Domain d4ik0a2: 4ik0 A:131-274 [234874] automated match to d1gqza2 complexed with iod; mutant |
Domain d4ik0b1: 4ik0 B:1-130 [234875] automated match to d1bwza1 complexed with iod; mutant |
Domain d4ik0b2: 4ik0 B:131-275 [234876] automated match to d1gqza2 complexed with iod; mutant |
Haemophilus influenzae [TaxId:727] [54509] (6 PDB entries) |
Domain d1bwza1: 1bwz A:1-130 [38337] |
Domain d1bwza2: 1bwz A:131-274 [38338] |
Domain d1gqza1: 1gqz A:1-130 [83311] |
Domain d1gqza2: 1gqz A:131-274 [83312] |
Domain d2gkea1: 2gke A:1-130 [135329] automated match to d1gqza1 complexed with acy, gol, zdp |
Domain d2gkea2: 2gke A:131-274 [135330] automated match to d1gqza2 complexed with acy, gol, zdp |
Domain d2gkja1: 2gkj A:1-130 [135331] automated match to d1gqza1 complexed with acy, zdr |
Domain d2gkja2: 2gkj A:131-274 [135332] automated match to d1gqza2 complexed with acy, zdr |
Domain d2q9ha1: 2q9h A:1-130 [150143] automated match to d1bwza1 complexed with acy, tla; mutant |
Domain d2q9ha2: 2q9h A:131-274 [150144] automated match to d2gkea2 complexed with acy, tla; mutant |
Domain d2q9ja1: 2q9j A:1-130 [150145] automated match to d1bwza1 complexed with edo, so4; mutant |
Domain d2q9ja2: 2q9j A:131-274 [150146] automated match to d2gkea2 complexed with edo, so4; mutant |
Thale cress (Arabidopsis thaliana) [TaxId:3702] [267831] (2 PDB entries) |
Domain d3ejxa1: 3ejx A:25-158 [264749] automated match to d4ijza1 complexed with zdp |
Domain d3ejxa2: 3ejx A:159-311 [264750] automated match to d4ijza2 complexed with zdp |
Domain d3ejxb1: 3ejx B:25-158 [264751] automated match to d4ijza1 complexed with zdp |
Domain d3ejxb2: 3ejx B:159-312 [264752] automated match to d4ijza2 complexed with zdp |
Domain d3ejxc1: 3ejx C:25-158 [264753] automated match to d4ijza1 complexed with zdp |
Domain d3ejxc2: 3ejx C:159-311 [264754] automated match to d4ijza2 complexed with zdp |
Domain d3ejxe1: 3ejx E:25-158 [264755] automated match to d4ijza1 complexed with zdp |
Domain d3ejxe2: 3ejx E:159-311 [264756] automated match to d4ijza2 complexed with zdp |
Domain d3ekma1: 3ekm A:25-158 [264757] automated match to d4ijza1 complexed with zdr |
Domain d3ekma2: 3ekm A:159-311 [264758] automated match to d4ijza2 complexed with zdr |
Domain d3ekmb1: 3ekm B:25-158 [264759] automated match to d4ijza1 complexed with zdr |
Domain d3ekmb2: 3ekm B:159-311 [264760] automated match to d4ijza2 complexed with zdr |
Domain d3ekmc1: 3ekm C:25-158 [264761] automated match to d4ijza1 complexed with zdr |
Domain d3ekmc2: 3ekm C:159-311 [264762] automated match to d4ijza2 complexed with zdr |
Domain d3ekme1: 3ekm E:25-158 [264763] automated match to d4ijza1 complexed with zdr |
Domain d3ekme2: 3ekm E:159-311 [264764] automated match to d4ijza2 complexed with zdr |
Timeline for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase: