Lineage for Protein: Diaminopimelate epimerase

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1898719Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. 1898720Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. 1898721Family d.21.1.1: Diaminopimelate epimerase [54507] (1 protein)
    automatically mapped to Pfam PF01678
  6. 1898722Protein Diaminopimelate epimerase [54508] (3 species)

Species:

  1. 1898723Escherichia coli K-12 [TaxId:83333] [234868] (2 PDB entries)
    1. Domains for 4ijz:
      1. 1898724Domain d4ijza1: 4ijz A:1-130 [234869]
        automated match to d1bwza1
        complexed with no3
      2. 1898725Domain d4ijza2: 4ijz A:131-274 [234872]
        automated match to d1gqza2
        complexed with no3
      3. 1898726Domain d4ijzb1: 4ijz B:1-130 [234870]
        automated match to d1bwza1
        complexed with no3
      4. 1898727Domain d4ijzb2: 4ijz B:131-275 [234871]
        automated match to d1gqza2
        complexed with no3
    2. Domains for 4ik0:
      1. 1898728Domain d4ik0a1: 4ik0 A:1-130 [234873]
        automated match to d1bwza1
        complexed with iod; mutant
      2. 1898729Domain d4ik0a2: 4ik0 A:131-274 [234874]
        automated match to d1gqza2
        complexed with iod; mutant
      3. 1898730Domain d4ik0b1: 4ik0 B:1-130 [234875]
        automated match to d1bwza1
        complexed with iod; mutant
      4. 1898731Domain d4ik0b2: 4ik0 B:131-275 [234876]
        automated match to d1gqza2
        complexed with iod; mutant
  2. 1898732Haemophilus influenzae [TaxId:727] [54509] (6 PDB entries)
    1. Domains for 1bwz:
      1. 1898743Domain d1bwza1: 1bwz A:1-130 [38337]
      2. 1898744Domain d1bwza2: 1bwz A:131-274 [38338]
    2. Domains for 1gqz:
      1. 1898737Domain d1gqza1: 1gqz A:1-130 [83311]
      2. 1898738Domain d1gqza2: 1gqz A:131-274 [83312]
    3. Domains for 2gke:
      1. 1898733Domain d2gkea1: 2gke A:1-130 [135329]
        automated match to d1gqza1
        complexed with acy, gol, zdp
      2. 1898734Domain d2gkea2: 2gke A:131-274 [135330]
        automated match to d1gqza2
        complexed with acy, gol, zdp
    4. Domains for 2gkj:
      1. 1898735Domain d2gkja1: 2gkj A:1-130 [135331]
        automated match to d1gqza1
        complexed with acy, zdr
      2. 1898736Domain d2gkja2: 2gkj A:131-274 [135332]
        automated match to d1gqza2
        complexed with acy, zdr
    5. Domains for 2q9h:
      1. 1898741Domain d2q9ha1: 2q9h A:1-130 [150143]
        automated match to d1bwza1
        complexed with acy, tla; mutant
      2. 1898742Domain d2q9ha2: 2q9h A:131-274 [150144]
        automated match to d2gkea2
        complexed with acy, tla; mutant
    6. Domains for 2q9j:
      1. 1898739Domain d2q9ja1: 2q9j A:1-130 [150145]
        automated match to d1bwza1
        complexed with edo, so4; mutant
      2. 1898740Domain d2q9ja2: 2q9j A:131-274 [150146]
        automated match to d2gkea2
        complexed with edo, so4; mutant
  3. 1898745Thale cress (Arabidopsis thaliana) [TaxId:3702] [267831] (2 PDB entries)
    1. Domains for 3ejx:
      1. 1898746Domain d3ejxa1: 3ejx A:25-158 [264749]
        automated match to d4ijza1
        complexed with zdp
      2. 1898747Domain d3ejxa2: 3ejx A:159-311 [264750]
        automated match to d4ijza2
        complexed with zdp
      3. 1898748Domain d3ejxb1: 3ejx B:25-158 [264751]
        automated match to d4ijza1
        complexed with zdp
      4. 1898749Domain d3ejxb2: 3ejx B:159-312 [264752]
        automated match to d4ijza2
        complexed with zdp
      5. 1898750Domain d3ejxc1: 3ejx C:25-158 [264753]
        automated match to d4ijza1
        complexed with zdp
      6. 1898751Domain d3ejxc2: 3ejx C:159-311 [264754]
        automated match to d4ijza2
        complexed with zdp
      7. 1898752Domain d3ejxe1: 3ejx E:25-158 [264755]
        automated match to d4ijza1
        complexed with zdp
      8. 1898753Domain d3ejxe2: 3ejx E:159-311 [264756]
        automated match to d4ijza2
        complexed with zdp
    2. Domains for 3ekm:
      1. 1898754Domain d3ekma1: 3ekm A:25-158 [264757]
        automated match to d4ijza1
        complexed with zdr
      2. 1898755Domain d3ekma2: 3ekm A:159-311 [264758]
        automated match to d4ijza2
        complexed with zdr
      3. 1898756Domain d3ekmb1: 3ekm B:25-158 [264759]
        automated match to d4ijza1
        complexed with zdr
      4. 1898757Domain d3ekmb2: 3ekm B:159-311 [264760]
        automated match to d4ijza2
        complexed with zdr
      5. 1898758Domain d3ekmc1: 3ekm C:25-158 [264761]
        automated match to d4ijza1
        complexed with zdr
      6. 1898759Domain d3ekmc2: 3ekm C:159-311 [264762]
        automated match to d4ijza2
        complexed with zdr
      7. 1898760Domain d3ekme1: 3ekm E:25-158 [264763]
        automated match to d4ijza1
        complexed with zdr
      8. 1898761Domain d3ekme2: 3ekm E:159-311 [264764]
        automated match to d4ijza2
        complexed with zdr

More info for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase

Timeline for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase: