Lineage for Protein: Diaminopimelate epimerase

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. Family d.21.1.1: Diaminopimelate epimerase [54507] (2 proteins)
    automatically mapped to Pfam PF01678
  6. Protein Diaminopimelate epimerase [54508] (3 species)

Species:

  1. Escherichia coli K-12 [TaxId:83333] [234868] (2 PDB entries)
    1. Domains for 4ijz:
      1. Domain d4ijza1: 4ijz A:1-130 [234869]
        Other proteins in same PDB: d4ijzb3
        automated match to d1bwza1
        complexed with no3
      2. Domain d4ijza2: 4ijz A:131-274 [234872]
        Other proteins in same PDB: d4ijzb3
        automated match to d1gqza2
        complexed with no3
      3. Domain d4ijzb1: 4ijz B:1-130 [234870]
        Other proteins in same PDB: d4ijzb3
        automated match to d1bwza1
        complexed with no3
      4. Domain d4ijzb2: 4ijz B:131-274 [234871]
        Other proteins in same PDB: d4ijzb3
        automated match to d1gqza2
        complexed with no3
    2. Domains for 4ik0:
      1. Domain d4ik0a1: 4ik0 A:1-130 [234873]
        Other proteins in same PDB: d4ik0b3
        automated match to d1bwza1
        complexed with iod; mutant
      2. Domain d4ik0a2: 4ik0 A:131-274 [234874]
        Other proteins in same PDB: d4ik0b3
        automated match to d1gqza2
        complexed with iod; mutant
      3. Domain d4ik0b1: 4ik0 B:1-130 [234875]
        Other proteins in same PDB: d4ik0b3
        automated match to d1bwza1
        complexed with iod; mutant
      4. Domain d4ik0b2: 4ik0 B:131-274 [234876]
        Other proteins in same PDB: d4ik0b3
        automated match to d1gqza2
        complexed with iod; mutant
  2. Haemophilus influenzae [TaxId:727] [54509] (6 PDB entries)
    1. Domains for 1bwz:
      1. Domain d1bwza1: 1bwz A:1-130 [38337]
      2. Domain d1bwza2: 1bwz A:131-274 [38338]
    2. Domains for 1gqz:
      1. Domain d1gqza1: 1gqz A:1-130 [83311]
      2. Domain d1gqza2: 1gqz A:131-274 [83312]
    3. Domains for 2gke:
      1. Domain d2gkea1: 2gke A:1-130 [135329]
        automated match to d1gqza1
        complexed with acy, gol, zdp
      2. Domain d2gkea2: 2gke A:131-274 [135330]
        automated match to d1gqza2
        complexed with acy, gol, zdp
    4. Domains for 2gkj:
      1. Domain d2gkja1: 2gkj A:1-130 [135331]
        automated match to d1gqza1
        complexed with acy, zdr
      2. Domain d2gkja2: 2gkj A:131-274 [135332]
        automated match to d1gqza2
        complexed with acy, zdr
    5. Domains for 2q9h:
      1. Domain d2q9ha1: 2q9h A:1-130 [150143]
        automated match to d1bwza1
        complexed with acy, tla; mutant
      2. Domain d2q9ha2: 2q9h A:131-274 [150144]
        automated match to d2gkea2
        complexed with acy, tla; mutant
    6. Domains for 2q9j:
      1. Domain d2q9ja1: 2q9j A:1-130 [150145]
        automated match to d1bwza1
        complexed with edo, so4; mutant
      2. Domain d2q9ja2: 2q9j A:131-274 [150146]
        automated match to d2gkea2
        complexed with edo, so4; mutant
  3. Thale cress (Arabidopsis thaliana) [TaxId:3702] [267831] (2 PDB entries)
    1. Domains for 3ejx:
      1. Domain d3ejxa1: 3ejx A:25-158 [264749]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza1
        complexed with zdp
      2. Domain d3ejxa2: 3ejx A:159-311 [264750]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza2
        complexed with zdp
      3. Domain d3ejxb1: 3ejx B:25-158 [264751]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza1
        complexed with zdp
      4. Domain d3ejxb2: 3ejx B:159-311 [264752]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza2
        complexed with zdp
      5. Domain d3ejxc1: 3ejx C:25-158 [264753]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza1
        complexed with zdp
      6. Domain d3ejxc2: 3ejx C:159-311 [264754]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza2
        complexed with zdp
      7. Domain d3ejxd1: 3ejx D:11-158 [291873]
        Other proteins in same PDB: d3ejxb3
        automated match to d3ejxa1
        complexed with zdp
      8. Domain d3ejxd2: 3ejx D:159-311 [291874]
        Other proteins in same PDB: d3ejxb3
        automated match to d3ejxa2
        complexed with zdp
      9. Domain d3ejxe1: 3ejx E:25-158 [264755]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza1
        complexed with zdp
      10. Domain d3ejxe2: 3ejx E:159-311 [264756]
        Other proteins in same PDB: d3ejxb3
        automated match to d4ijza2
        complexed with zdp
      11. Domain d3ejxf1: 3ejx F:11-158 [291875]
        Other proteins in same PDB: d3ejxb3
        automated match to d3ejxa1
        complexed with zdp
      12. Domain d3ejxf2: 3ejx F:159-311 [291876]
        Other proteins in same PDB: d3ejxb3
        automated match to d3ejxa2
        complexed with zdp
    2. Domains for 3ekm:
      1. Domain d3ekma1: 3ekm A:25-158 [264757]
        automated match to d4ijza1
        complexed with zdr
      2. Domain d3ekma2: 3ekm A:159-311 [264758]
        automated match to d4ijza2
        complexed with zdr
      3. Domain d3ekmb1: 3ekm B:25-158 [264759]
        automated match to d4ijza1
        complexed with zdr
      4. Domain d3ekmb2: 3ekm B:159-311 [264760]
        automated match to d4ijza2
        complexed with zdr
      5. Domain d3ekmc1: 3ekm C:25-158 [264761]
        automated match to d4ijza1
        complexed with zdr
      6. Domain d3ekmc2: 3ekm C:159-311 [264762]
        automated match to d4ijza2
        complexed with zdr
      7. Domain d3ekmd1: 3ekm D:11-158 [291881]
        automated match to d3ejxa1
        complexed with zdr
      8. Domain d3ekmd2: 3ekm D:159-311 [291882]
        automated match to d3ejxa2
        complexed with zdr
      9. Domain d3ekme1: 3ekm E:25-158 [264763]
        automated match to d4ijza1
        complexed with zdr
      10. Domain d3ekme2: 3ekm E:159-311 [264764]
        automated match to d4ijza2
        complexed with zdr
      11. Domain d3ekmf1: 3ekm F:11-158 [291883]
        automated match to d3ejxa1
        complexed with zdr
      12. Domain d3ekmf2: 3ekm F:159-311 [291884]
        automated match to d3ejxa2
        complexed with zdr

More info for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase

Timeline for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase: