Lineage for Protein: Diaminopimelate epimerase

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1643180Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. 1643181Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. 1643182Family d.21.1.1: Diaminopimelate epimerase [54507] (1 protein)
    automatically mapped to Pfam PF01678
  6. 1643183Protein Diaminopimelate epimerase [54508] (2 species)

Species:

  1. 1643184Escherichia coli K-12 [TaxId:83333] [234868] (2 PDB entries)
    1. Domains for 4ijz:
      1. 1643185Domain d4ijza1: 4ijz A:1-130 [234869]
        automated match to d1bwza1
        complexed with no3
      2. 1643186Domain d4ijza2: 4ijz A:131-274 [234872]
        automated match to d1gqza2
        complexed with no3
      3. 1643187Domain d4ijzb1: 4ijz B:1-130 [234870]
        automated match to d1bwza1
        complexed with no3
      4. 1643188Domain d4ijzb2: 4ijz B:131-275 [234871]
        automated match to d1gqza2
        complexed with no3
    2. Domains for 4ik0:
      1. 1643189Domain d4ik0a1: 4ik0 A:1-130 [234873]
        automated match to d1bwza1
        complexed with iod; mutant
      2. 1643190Domain d4ik0a2: 4ik0 A:131-274 [234874]
        automated match to d1gqza2
        complexed with iod; mutant
      3. 1643191Domain d4ik0b1: 4ik0 B:1-130 [234875]
        automated match to d1bwza1
        complexed with iod; mutant
      4. 1643192Domain d4ik0b2: 4ik0 B:131-275 [234876]
        automated match to d1gqza2
        complexed with iod; mutant
  2. 1643193Haemophilus influenzae [TaxId:727] [54509] (6 PDB entries)
    1. Domains for 1bwz:
      1. 1643204Domain d1bwza1: 1bwz A:1-130 [38337]
      2. 1643205Domain d1bwza2: 1bwz A:131-274 [38338]
    2. Domains for 1gqz:
      1. 1643198Domain d1gqza1: 1gqz A:1-130 [83311]
      2. 1643199Domain d1gqza2: 1gqz A:131-274 [83312]
    3. Domains for 2gke:
      1. 1643194Domain d2gkea1: 2gke A:1-130 [135329]
        automated match to d1gqza1
        complexed with acy, gol, zdp
      2. 1643195Domain d2gkea2: 2gke A:131-274 [135330]
        automated match to d1gqza2
        complexed with acy, gol, zdp
    4. Domains for 2gkj:
      1. 1643196Domain d2gkja1: 2gkj A:1-130 [135331]
        automated match to d1gqza1
        complexed with acy, zdr
      2. 1643197Domain d2gkja2: 2gkj A:131-274 [135332]
        automated match to d1gqza2
        complexed with acy, zdr
    5. Domains for 2q9h:
      1. 1643202Domain d2q9ha1: 2q9h A:1-130 [150143]
        automated match to d1bwza1
        complexed with acy, tla; mutant
      2. 1643203Domain d2q9ha2: 2q9h A:131-274 [150144]
        automated match to d2gkea2
        complexed with acy, tla; mutant
    6. Domains for 2q9j:
      1. 1643200Domain d2q9ja1: 2q9j A:1-130 [150145]
        automated match to d1bwza1
        complexed with edo, so4; mutant
      2. 1643201Domain d2q9ja2: 2q9j A:131-274 [150146]
        automated match to d2gkea2
        complexed with edo, so4; mutant

More info for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase

Timeline for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase: