Lineage for Species: Slime mold (Physarum polycephalum) [TaxId: 5791]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2155547Fold d.4: His-Me finger endonucleases [54059] (1 superfamily)
    core: (alpha)-beta-omega_loop-beta-alpha; embeded in larger different structures
  4. 2155548Superfamily d.4.1: His-Me finger endonucleases [54060] (7 families) (S)
    common motif contains conserved histidine residue and metal-binding site
  5. 2155631Family d.4.1.3: Intron-encoded homing endonucleases [54069] (2 protein domains)
  6. 2155635Protein Intron-encoded homing endonuclease I-PpoI [54070] (1 species)
  7. 2155636Species Slime mold (Physarum polycephalum) [TaxId:5791] [54071] (8 PDB entries)

PDB entries in Species: Slime mold (Physarum polycephalum) [TaxId: 5791]:

  1. Domain(s) for 1a73:
    1. 2155637Domain d1a73a_: 1a73 A: [37145]
      protein/DNA complex; complexed with mg, zn
    2. 2155638Domain d1a73b_: 1a73 B: [37146]
      protein/DNA complex; complexed with mg, zn
  2. Domain(s) for 1a74:
    1. 2155649Domain d1a74a_: 1a74 A: [37155]
      protein/DNA complex; complexed with zn
    2. 2155650Domain d1a74b_: 1a74 B: [37156]
      protein/DNA complex; complexed with zn
  3. Domain(s) for 1cyq:
    1. 2155639Domain d1cyqa_: 1cyq A: [37147]
      protein/DNA complex; complexed with mg, zn
    2. 2155640Domain d1cyqb_: 1cyq B: [37148]
      protein/DNA complex; complexed with mg, zn
  4. Domain(s) for 1cz0:
    1. 2155643Domain d1cz0a_: 1cz0 A: [37151]
      protein/DNA complex; complexed with na, zn
    2. 2155644Domain d1cz0b_: 1cz0 B: [37152]
      protein/DNA complex; complexed with na, zn
  5. Domain(s) for 1evw:
    1. 2155651Domain d1evwa_: 1evw A: [37157]
      protein/DNA complex; complexed with mg, zn; mutant
    2. 2155652Domain d1evwb_: 1evw B: [37158]
      protein/DNA complex; complexed with mg, zn; mutant
    3. 2155653Domain d1evwc_: 1evw C: [37159]
      protein/DNA complex; complexed with mg, zn; mutant
    4. 2155654Domain d1evwd_: 1evw D: [37160]
      protein/DNA complex; complexed with mg, zn; mutant
  6. Domain(s) for 1evx:
    1. 2155641Domain d1evxa_: 1evx A: [37149]
      complexed with so4, zn
    2. 2155642Domain d1evxb_: 1evx B: [37150]
      complexed with so4, zn
  7. Domain(s) for 1ipp:
    1. 2155647Domain d1ippa_: 1ipp A: [37153]
      protein/DNA complex; complexed with cd, mg
    2. 2155648Domain d1ippb_: 1ipp B: [37154]
      protein/DNA complex; complexed with cd, mg
  8. Domain(s) for 2o6m:
    1. 2155645Domain d2o6ma_: 2o6m A: [166566]
      automated match to d1cyqa_
      protein/DNA complex; complexed with mg, zn; mutant
    2. 2155646Domain d2o6mb_: 2o6m B: [166567]
      automated match to d1cyqa_
      protein/DNA complex; complexed with mg, zn; mutant

More info for Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI

Timeline for Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI: