SCOP 1.61: Protein: Retroviral integrase, catalytic domain

Lineage for Protein: Retroviral integrase, catalytic domain

Root: SCOP 1.61
Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
Superfamily c.55.3: Ribonuclease H-like [53098] (7 families)
Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (1 protein)
Protein Retroviral integrase, catalytic domain [53108] (3 species)

Species:

Human immunodeficiency virus type 1 [TaxId:11676] [53110] (17 PDB entries)
1. Domain for 1b92:
  - Domain d1b92a_: 1b92 A: [33654]
2. Domain for 1b9d:
  - Domain d1b9da_: 1b9d A: [33649]
3. Domain for 1b9f:
  - Domain d1b9fa_: 1b9f A: [33648]
4. Domain for 1bhl:
  - Domain d1bhl__: 1bhl - [33662]
5. Domains for 1bi4:
  1. Domain d1bi4a_: 1bi4 A: [33666]
  2. Domain d1bi4b_: 1bi4 B: [33667]
  3. Domain d1bi4c_: 1bi4 C: [33668]
6. Domains for 1bis:
  1. Domain d1bisa_: 1bis A: [33650]
  2. Domain d1bisb_: 1bis B: [33651]
7. Domains for 1biu:
  1. Domain d1biua_: 1biu A: [33663]
  2. Domain d1biub_: 1biu B: [33664]
  3. Domain d1biuc_: 1biu C: [33665]
8. Domains for 1biz:
  1. Domain d1biza_: 1biz A: [33652]
  2. Domain d1bizb_: 1biz B: [33653]
9. Domains for 1bl3:
  1. Domain d1bl3a_: 1bl3 A: [33655]
  2. Domain d1bl3b_: 1bl3 B: [33656]
  3. Domain d1bl3c_: 1bl3 C: [33657]
10. Domains for 1ex4:
  1. Domain d1ex4a2: 1ex4 A:56-222 [33670]
    Other proteins in same PDB: d1ex4a1, d1ex4b1
  2. Domain d1ex4b2: 1ex4 B:55-222 [33671]
    Other proteins in same PDB: d1ex4a1, d1ex4b1
11. Domains for 1exq:
  1. Domain d1exqa_: 1exq A: [33646]
  2. Domain d1exqb_: 1exq B: [33647]
12. Domain for 1hyv:
  - Domain d1hyva_: 1hyv A: [61424]
13. Domain for 1hyz:
  - Domain d1hyza_: 1hyz A: [61426]
14. Domain for 1itg:
  - Domain d1itg__: 1itg - [33661]
15. Domains for 1k6y:
  1. Domain d1k6ya2: 1k6y A:56-210 [68240]
    Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
  2. Domain d1k6yb2: 1k6y B:56-212 [68242]
    Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
  3. Domain d1k6yc2: 1k6y C:56-209 [68244]
    Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
  4. Domain d1k6yd2: 1k6y D:56-211 [68246]
    Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
16. Domains for 1qs4:
  1. Domain d1qs4a_: 1qs4 A: [33658]
  2. Domain d1qs4b_: 1qs4 B: [33659]
  3. Domain d1qs4c_: 1qs4 C: [33660]
17. Domain for 2itg:
  - Domain d2itg__: 2itg - [33669]
Rous sarcoma virus (RSV, avian sarcoma virus) [53109] (21 PDB entries)
1. Domain for 1a5v:
  - Domain d1a5v__: 1a5v - [33629]
2. Domain for 1a5w:
  - Domain d1a5w__: 1a5w - [33632]
3. Domain for 1a5x:
  - Domain d1a5x__: 1a5x - [33630]
4. Domain for 1asu:
  - Domain d1asu__: 1asu - [33626]
5. Domain for 1asv:
  - Domain d1asv__: 1asv - [33634]
6. Domain for 1asw:
  - Domain d1asw__: 1asw - [33627]
7. Domains for 1c0m:
  1. Domain d1c0ma2: 1c0m A:49-216 [33640]
    Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
  2. Domain d1c0mb2: 1c0m B:54-216 [33641]
    Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
  3. Domain d1c0mc2: 1c0m C:49-216 [33642]
    Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
  4. Domain d1c0md2: 1c0m D:54-216 [33643]
    Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
8. Domains for 1c1a:
  1. Domain d1c1aa2: 1c1a A:52-216 [33644]
    Other proteins in same PDB: d1c1aa1, d1c1ab1
  2. Domain d1c1ab2: 1c1a B:55-216 [33645]
    Other proteins in same PDB: d1c1aa1, d1c1ab1
9. Domain for 1cxq:
  - Domain d1cxqa_: 1cxq A: [33621]
10. Domain for 1cxu:
  - Domain d1cxua_: 1cxu A: [33624]
11. Domain for 1cz9:
  - Domain d1cz9a_: 1cz9 A: [33623]
12. Domain for 1czb:
  - Domain d1czba_: 1czb A: [33622]
13. Domain for 1vsd:
  - Domain d1vsd__: 1vsd - [33625]
14. Domain for 1vse:
  - Domain d1vse__: 1vse - [33631]
15. Domain for 1vsf:
  - Domain d1vsf__: 1vsf - [33628]
16. Domain for 1vsh:
  - Domain d1vsh__: 1vsh - [33633]
17. Domain for 1vsi:
  - Domain d1vsi__: 1vsi - [33638]
18. Domain for 1vsj:
  - Domain d1vsj__: 1vsj - [33636]
19. Domain for 1vsk:
  - Domain d1vsk__: 1vsk - [33639]
20. Domain for 1vsl:
  - Domain d1vsla_: 1vsl A: [33637]
21. Domain for 1vsm:
  - Domain d1vsma_: 1vsm A: [33635]
Simian immunodeficiency virus [53111] (1 PDB entry)
- Domains for 1c6v:
  1. Domain d1c6va_: 1c6v A: [33672]
    Other proteins in same PDB: d1c6vx_
  2. Domain d1c6vb_: 1c6v B: [33673]
    Other proteins in same PDB: d1c6vx_
  3. Domain d1c6vc_: 1c6v C: [33674]
    Other proteins in same PDB: d1c6vx_
  4. Domain d1c6vd_: 1c6v D: [33675]
    Other proteins in same PDB: d1c6vx_

More info for Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain

Timeline for Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain:

Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain first appeared (with stable ids) in SCOP 1.55
Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain appears in SCOP 1.59
Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain appears in SCOP 1.63
Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain appears in the current release, SCOPe 2.08