Lineage for Protein: Retroviral integrase, catalytic domain

  1. Root: SCOP 1.63
  2. 235644Class c: Alpha and beta proteins (a/b) [51349] (117 folds)
  3. 245987Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 246267Superfamily c.55.3: Ribonuclease H-like [53098] (7 families) (S)
    consists of one domain of this fold
  5. 246386Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (1 protein)
  6. 246387Protein Retroviral integrase, catalytic domain [53108] (3 species)

Species:

  1. 246388Human immunodeficiency virus type 1 [TaxId:11676] [53110] (17 PDB entries)
    1. Domain for 1b92:
    2. Domain for 1b9d:
    3. Domain for 1b9f:
    4. Domain for 1bhl:
    5. Domains for 1bi4:
      1. 246415Domain d1bi4a_: 1bi4 A: [33666]
      2. 246416Domain d1bi4b_: 1bi4 B: [33667]
      3. 246417Domain d1bi4c_: 1bi4 C: [33668]
        mutant
    6. Domains for 1bis:
      1. 246394Domain d1bisa_: 1bis A: [33650]
      2. 246395Domain d1bisb_: 1bis B: [33651]
        mutant
    7. Domains for 1biu:
      1. 246407Domain d1biua_: 1biu A: [33663]
      2. 246408Domain d1biub_: 1biu B: [33664]
      3. 246409Domain d1biuc_: 1biu C: [33665]
        complexed with mg; mutant
    8. Domains for 1biz:
      1. 246396Domain d1biza_: 1biz A: [33652]
      2. 246397Domain d1bizb_: 1biz B: [33653]
        complexed with cac; mutant
    9. Domains for 1bl3:
      1. 246399Domain d1bl3a_: 1bl3 A: [33655]
      2. 246400Domain d1bl3b_: 1bl3 B: [33656]
      3. 246401Domain d1bl3c_: 1bl3 C: [33657]
        complexed with mg; mutant
    10. Domains for 1ex4:
      1. 246419Domain d1ex4a2: 1ex4 A:56-222 [33670]
        Other proteins in same PDB: d1ex4a1, d1ex4b1
      2. 246420Domain d1ex4b2: 1ex4 B:55-222 [33671]
        Other proteins in same PDB: d1ex4a1, d1ex4b1
        complexed with cps; mutant
    11. Domains for 1exq:
      1. 246389Domain d1exqa_: 1exq A: [33646]
      2. 246390Domain d1exqb_: 1exq B: [33647]
        complexed with cd, cl, so4; mutant
    12. Domain for 1hyv:
    13. Domain for 1hyz:
    14. Domain for 1itg:
    15. Domains for 1k6y:
      1. 246411Domain d1k6ya2: 1k6y A:56-210 [68240]
        Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
      2. 246412Domain d1k6yb2: 1k6y B:56-212 [68242]
        Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
      3. 246413Domain d1k6yc2: 1k6y C:56-209 [68244]
        Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
      4. 246414Domain d1k6yd2: 1k6y D:56-211 [68246]
        Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
        complexed with k, po4, zn; mutant
    16. Domains for 1qs4:
      1. 246402Domain d1qs4a_: 1qs4 A: [33658]
      2. 246403Domain d1qs4b_: 1qs4 B: [33659]
      3. 246404Domain d1qs4c_: 1qs4 C: [33660]
    17. Domain for 2itg:
  2. 246421Rous sarcoma virus (RSV, avian sarcoma virus) [53109] (21 PDB entries)
    1. Domain for 1a5v:
    2. Domain for 1a5w:
    3. Domain for 1a5x:
    4. Domain for 1asu:
    5. Domain for 1asv:
    6. Domain for 1asw:
    7. Domains for 1c0m:
      1. 246441Domain d1c0ma2: 1c0m A:49-216 [33640]
        Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
      2. 246442Domain d1c0mb2: 1c0m B:54-216 [33641]
        Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
      3. 246443Domain d1c0mc2: 1c0m C:49-216 [33642]
        Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
      4. 246444Domain d1c0md2: 1c0m D:54-216 [33643]
        Other proteins in same PDB: d1c0ma1, d1c0mb1, d1c0mc1, d1c0md1
        mutant
    8. Domains for 1c1a:
      1. 246445Domain d1c1aa2: 1c1a A:52-216 [33644]
        Other proteins in same PDB: d1c1aa1, d1c1ab1
      2. 246446Domain d1c1ab2: 1c1a B:55-216 [33645]
        Other proteins in same PDB: d1c1aa1, d1c1ab1
        mutant
    9. Domain for 1cxq:
    10. Domain for 1cxu:
    11. Domain for 1cz9:
    12. Domain for 1czb:
    13. Domain for 1vsd:
    14. Domain for 1vse:
    15. Domain for 1vsf:
    16. Domain for 1vsh:
    17. Domain for 1vsi:
    18. Domain for 1vsj:
    19. Domain for 1vsk:
    20. Domain for 1vsl:
    21. Domain for 1vsm:
  3. 246447Simian immunodeficiency virus [53111] (1 PDB entry)

More info for Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain

Timeline for Protein Retroviral integrase, catalytic domain from c.55.3.2: Retroviral integrase, catalytic domain: