SCOPe 2.08: Protein: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)

Lineage for Protein: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families)
Family c.1.2.3: Decarboxylase [51375] (4 proteins)
Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) [51376] (7 species)

Species:

Bacillus subtilis [TaxId:1423] [51377] (1 PDB entry)
- Domains for 1dbt:
  1. Domain d1dbta_: 1dbt A: [28539]
    complex with UMP
    complexed with u5p
  2. Domain d1dbtb_: 1dbt B: [28540]
    complex with UMP
    complexed with u5p
  3. Domain d1dbtc_: 1dbt C: [28541]
    complex with UMP
    complexed with u5p
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51380] (2 PDB entries)
1. Domains for 1dqw:
  1. Domain d1dqwa_: 1dqw A: [28551]
  2. Domain d1dqwb_: 1dqw B: [28552]
  3. Domain d1dqwc_: 1dqw C: [28553]
  4. Domain d1dqwd_: 1dqw D: [28554]
2. Domains for 1dqx:
  1. Domain d1dqxa_: 1dqx A: [28555]
    complex with 6-hydroxyuridine 5'-phosphate (BMP)
    complexed with bmp
  2. Domain d1dqxb_: 1dqx B: [28556]
    complex with 6-hydroxyuridine 5'-phosphate (BMP)
    complexed with bmp
  3. Domain d1dqxc_: 1dqx C: [28557]
    complex with 6-hydroxyuridine 5'-phosphate (BMP)
    complexed with bmp
  4. Domain d1dqxd_: 1dqx D: [28558]
    complex with 6-hydroxyuridine 5'-phosphate (BMP)
    complexed with bmp
Escherichia coli [TaxId:562] [51378] (3 PDB entries)
1. Domains for 1eix:
  1. Domain d1eixa_: 1eix A: [28542]
    complexed with bmq
  2. Domain d1eixb_: 1eix B: [28543]
    complexed with bmq
  3. Domain d1eixc_: 1eix C: [28544]
    complexed with bmq
  4. Domain d1eixd_: 1eix D: [28545]
    complexed with bmq
2. Domains for 1jjk:
  1. Domain d1jjka_: 1jjk A: [63122]
    complexed with bmp
  2. Domain d1jjkb_: 1jjk B: [63123]
    complexed with bmp
  3. Domain d1jjkc_: 1jjk C: [63124]
    complexed with bmp
  4. Domain d1jjkd_: 1jjk D: [63125]
    complexed with bmp
  5. Domain d1jjke_: 1jjk E: [63126]
    complexed with bmp
  6. Domain d1jjkf_: 1jjk F: [63127]
    complexed with bmp
  7. Domain d1jjkg_: 1jjk G: [63128]
    complexed with bmp
  8. Domain d1jjkh_: 1jjk H: [63129]
    complexed with bmp
  9. Domain d1jjki_: 1jjk I: [63130]
    complexed with bmp
  10. Domain d1jjkj_: 1jjk J: [63131]
    complexed with bmp
  11. Domain d1jjkk_: 1jjk K: [63132]
    complexed with bmp
  12. Domain d1jjkl_: 1jjk L: [63133]
    complexed with bmp
  13. Domain d1jjkm_: 1jjk M: [63134]
    complexed with bmp
  14. Domain d1jjkn_: 1jjk N: [63135]
    complexed with bmp
  15. Domain d1jjko_: 1jjk O: [63136]
    complexed with bmp
  16. Domain d1jjkp_: 1jjk P: [63137]
    complexed with bmp
3. Domains for 1l2u:
  1. Domain d1l2ua_: 1l2u A: [73516]
  2. Domain d1l2ub_: 1l2u B: [73517]
Methanobacterium thermoautotrophicum [TaxId:145262] [51379] (16 PDB entries)
1. Domain for 1dv7:
  - Domain d1dv7a_: 1dv7 A: [28550]
2. Domains for 1dvj:
  1. Domain d1dvja1: 1dvj A:9-228 [28546]
    Other proteins in same PDB: d1dvja2, d1dvjc2
    complex with 6-azaUMP
    complexed with up6
  2. Domain d1dvjb_: 1dvj B: [28547]
    Other proteins in same PDB: d1dvja2, d1dvjc2
    complex with 6-azaUMP
    complexed with up6
  3. Domain d1dvjc1: 1dvj C:9-228 [28548]
    Other proteins in same PDB: d1dvja2, d1dvjc2
    complex with 6-azaUMP
    complexed with up6
  4. Domain d1dvjd_: 1dvj D: [28549]
    Other proteins in same PDB: d1dvja2, d1dvjc2
    complex with 6-azaUMP
    complexed with up6
3. Domain for 1kly:
  - Domain d1klya_: 1kly A: [72730]
    complexed with up6; mutant
4. Domain for 1klz:
  - Domain d1klza_: 1klz A: [72731]
    complexed with cl, u; mutant
5. Domains for 1km0:
  1. Domain d1km0a1: 1km0 A:9-228 [72732]
    Other proteins in same PDB: d1km0a2, d1km0c2
    complexed with up6; mutant
  2. Domain d1km0b_: 1km0 B: [72733]
    Other proteins in same PDB: d1km0a2, d1km0c2
    complexed with up6; mutant
  3. Domain d1km0c1: 1km0 C:9-228 [72734]
    Other proteins in same PDB: d1km0a2, d1km0c2
    complexed with up6; mutant
  4. Domain d1km0d_: 1km0 D: [72735]
    Other proteins in same PDB: d1km0a2, d1km0c2
    complexed with up6; mutant
6. Domains for 1km1:
  1. Domain d1km1a_: 1km1 A: [72736]
    complexed with up6; mutant
  2. Domain d1km1b_: 1km1 B: [72737]
    complexed with up6; mutant
7. Domain for 1km2:
  - Domain d1km2a_: 1km2 A: [72738]
    complexed with up6; mutant
8. Domain for 1km3:
  - Domain d1km3a_: 1km3 A: [72739]
    complexed with up6; mutant
9. Domain for 1km4:
  - Domain d1km4a_: 1km4 A: [72740]
    complexed with u; mutant
10. Domain for 1km5:
  - Domain d1km5a_: 1km5 A: [72741]
    complexed with cl, up6; mutant
11. Domain for 1km6:
  - Domain d1km6a_: 1km6 A: [72742]
    complexed with omp; mutant
12. Domains for 1lol:
  1. Domain d1lola_: 1lol A: [74150]
    complexed with bu2, xmp
  2. Domain d1lolb_: 1lol B: [74151]
    complexed with bu2, xmp
13. Domain for 1loq:
  - Domain d1loqa_: 1loq A: [74155]
    complexed with u
14. Domain for 1lor:
  - Domain d1lora_: 1lor A: [74156]
    complexed with bmp
15. Domains for 1los:
  1. Domain d1losa_: 1los A: [74157]
    complexed with up6; mutant
  2. Domain d1losb_: 1los B: [74158]
    complexed with up6; mutant
  3. Domain d1losc_: 1los C: [74159]
    complexed with up6; mutant
  4. Domain d1losd_: 1los D: [74160]
    complexed with up6; mutant
16. Domains for 1lp6:
  1. Domain d1lp6a_: 1lp6 A: [74171]
    complexed with c5p
  2. Domain d1lp6b_: 1lp6 B: [74172]
    complexed with c5p
Plasmodium vivax [TaxId:5855] [141747] (1 PDB entry)
- Domain for 2ffc:
  - Domain d2ffca1: 2ffc A:20-351 [133378]
    complexed with u5p
Pyrococcus horikoshii [TaxId:53953] [141748] (4 PDB entries)
Uniprot O58462 1-208
1. Domains for 2cz5:
  1. Domain d2cz5a1: 2cz5 A:1-208 [131038]
    complexed with cit, gol
  2. Domain d2cz5b_: 2cz5 B: [131039]
    automated match to d2cz5a1
    complexed with cit, gol
2. Domains for 2czd:
  1. Domain d2czda_: 2czd A: [131045]
    automated match to d2cz5a1
    complexed with dtt, gol
  2. Domain d2czdb_: 2czd B: [131046]
    automated match to d2cz5a1
    complexed with dtt, gol
3. Domains for 2cze:
  1. Domain d2czea_: 2cze A: [131047]
    automated match to d2cz5a1
    complexed with cit, gol, u5p
  2. Domain d2czeb_: 2cze B: [131048]
    automated match to d2cz5a1
    complexed with cit, gol, u5p
4. Domains for 2czf:
  1. Domain d2czfa_: 2czf A: [131049]
    automated match to d2cz5a1
    complexed with xmp
  2. Domain d2czfb_: 2czf B: [131050]
    automated match to d2cz5a1
    complexed with xmp
Thermotoga maritima [TaxId:2336] [141746] (1 PDB entry)
Uniprot Q9WYG7 1-198
- Domain for 1vqt:
  - Domain d1vqta1: 1vqt A:1-198 [120417]
    Other proteins in same PDB: d1vqta2
    complexed with edo

More info for Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase

Timeline for Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase:

Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase first appeared (with stable ids) in SCOP 1.55, called Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase appears in SCOPe 2.07