Lineage for Protein: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2079053Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 2079148Family c.1.2.3: Decarboxylase [51375] (4 protein domains)
  6. 2079188Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) [51376] (7 species)

Species:

  1. 2079189Bacillus subtilis [TaxId:1423] [51377] (1 PDB entry)
  2. 2079193Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51380] (2 PDB entries)
    1. Domains for 1dqw:
      1. 2079194Domain d1dqwa_: 1dqw A: [28551]
      2. 2079195Domain d1dqwb_: 1dqw B: [28552]
      3. 2079196Domain d1dqwc_: 1dqw C: [28553]
      4. 2079197Domain d1dqwd_: 1dqw D: [28554]
    2. Domains for 1dqx:
      1. 2079198Domain d1dqxa_: 1dqx A: [28555]
        complex with 6-hydroxyuridine 5'-phosphate (BMP)
        complexed with bmp
      2. 2079199Domain d1dqxb_: 1dqx B: [28556]
        complex with 6-hydroxyuridine 5'-phosphate (BMP)
        complexed with bmp
      3. 2079200Domain d1dqxc_: 1dqx C: [28557]
        complex with 6-hydroxyuridine 5'-phosphate (BMP)
        complexed with bmp
      4. 2079201Domain d1dqxd_: 1dqx D: [28558]
        complex with 6-hydroxyuridine 5'-phosphate (BMP)
        complexed with bmp
  3. 2079202Escherichia coli [TaxId:562] [51378] (3 PDB entries)
    1. Domains for 1eix:
      1. 2079203Domain d1eixa_: 1eix A: [28542]
        complexed with bmq
      2. 2079204Domain d1eixb_: 1eix B: [28543]
        complexed with bmq
      3. 2079205Domain d1eixc_: 1eix C: [28544]
        complexed with bmq
      4. 2079206Domain d1eixd_: 1eix D: [28545]
        complexed with bmq
    2. Domains for 1jjk:
      1. 2079209Domain d1jjka_: 1jjk A: [63122]
        complexed with bmp
      2. 2079210Domain d1jjkb_: 1jjk B: [63123]
        complexed with bmp
      3. 2079211Domain d1jjkc_: 1jjk C: [63124]
        complexed with bmp
      4. 2079212Domain d1jjkd_: 1jjk D: [63125]
        complexed with bmp
      5. 2079213Domain d1jjke_: 1jjk E: [63126]
        complexed with bmp
      6. 2079214Domain d1jjkf_: 1jjk F: [63127]
        complexed with bmp
      7. 2079215Domain d1jjkg_: 1jjk G: [63128]
        complexed with bmp
      8. 2079216Domain d1jjkh_: 1jjk H: [63129]
        complexed with bmp
      9. 2079217Domain d1jjki_: 1jjk I: [63130]
        complexed with bmp
      10. 2079218Domain d1jjkj_: 1jjk J: [63131]
        complexed with bmp
      11. 2079219Domain d1jjkk_: 1jjk K: [63132]
        complexed with bmp
      12. 2079220Domain d1jjkl_: 1jjk L: [63133]
        complexed with bmp
      13. 2079221Domain d1jjkm_: 1jjk M: [63134]
        complexed with bmp
      14. 2079222Domain d1jjkn_: 1jjk N: [63135]
        complexed with bmp
      15. 2079223Domain d1jjko_: 1jjk O: [63136]
        complexed with bmp
      16. 2079224Domain d1jjkp_: 1jjk P: [63137]
        complexed with bmp
    3. Domains for 1l2u:
      1. 2079207Domain d1l2ua_: 1l2u A: [73516]
      2. 2079208Domain d1l2ub_: 1l2u B: [73517]
  4. 2079225Methanobacterium thermoautotrophicum [TaxId:145262] [51379] (16 PDB entries)
    1. Domain for 1dv7:
    2. Domains for 1dvj:
      1. 2079231Domain d1dvja1: 1dvj A:9-228 [28546]
        Other proteins in same PDB: d1dvja2, d1dvjc2
        complex with 6-azaUMP
        complexed with up6
      2. 2079232Domain d1dvjb_: 1dvj B: [28547]
        Other proteins in same PDB: d1dvja2, d1dvjc2
        complex with 6-azaUMP
        complexed with up6
      3. 2079233Domain d1dvjc1: 1dvj C:9-228 [28548]
        Other proteins in same PDB: d1dvja2, d1dvjc2
        complex with 6-azaUMP
        complexed with up6
      4. 2079234Domain d1dvjd_: 1dvj D: [28549]
        Other proteins in same PDB: d1dvja2, d1dvjc2
        complex with 6-azaUMP
        complexed with up6
    3. Domain for 1kly:
    4. Domain for 1klz:
    5. Domains for 1km0:
      1. 2079241Domain d1km0a1: 1km0 A:9-228 [72732]
        Other proteins in same PDB: d1km0a2, d1km0c2
        complexed with up6; mutant
      2. 2079242Domain d1km0b_: 1km0 B: [72733]
        Other proteins in same PDB: d1km0a2, d1km0c2
        complexed with up6; mutant
      3. 2079243Domain d1km0c1: 1km0 C:9-228 [72734]
        Other proteins in same PDB: d1km0a2, d1km0c2
        complexed with up6; mutant
      4. 2079244Domain d1km0d_: 1km0 D: [72735]
        Other proteins in same PDB: d1km0a2, d1km0c2
        complexed with up6; mutant
    6. Domains for 1km1:
      1. 2079239Domain d1km1a_: 1km1 A: [72736]
        complexed with up6; mutant
      2. 2079240Domain d1km1b_: 1km1 B: [72737]
        complexed with up6; mutant
    7. Domain for 1km2:
    8. Domain for 1km3:
    9. Domain for 1km4:
    10. Domain for 1km5:
    11. Domain for 1km6:
    12. Domains for 1lol:
      1. 2079248Domain d1lola_: 1lol A: [74150]
        complexed with bu2, xmp
      2. 2079249Domain d1lolb_: 1lol B: [74151]
        complexed with bu2, xmp
    13. Domain for 1loq:
    14. Domain for 1lor:
    15. Domains for 1los:
      1. 2079250Domain d1losa_: 1los A: [74157]
        complexed with up6; mutant
      2. 2079251Domain d1losb_: 1los B: [74158]
        complexed with up6; mutant
      3. 2079252Domain d1losc_: 1los C: [74159]
        complexed with up6; mutant
      4. 2079253Domain d1losd_: 1los D: [74160]
        complexed with up6; mutant
    16. Domains for 1lp6:
      1. 2079246Domain d1lp6a_: 1lp6 A: [74171]
        complexed with c5p
      2. 2079247Domain d1lp6b_: 1lp6 B: [74172]
        complexed with c5p
  5. 2079254Plasmodium vivax [TaxId:5855] [141747] (1 PDB entry)
  6. 2079256Pyrococcus horikoshii [TaxId:53953] [141748] (4 PDB entries)
    Uniprot O58462 1-208
    1. Domains for 2cz5:
      1. 2079261Domain d2cz5a1: 2cz5 A:1-208 [131038]
        complexed with cit, gol
      2. 2079262Domain d2cz5b_: 2cz5 B: [131039]
        automated match to d2cz5a1
        complexed with cit, gol
    2. Domains for 2czd:
      1. 2079257Domain d2czda_: 2czd A: [131045]
        automated match to d2cz5a1
        complexed with dtt, gol
      2. 2079258Domain d2czdb_: 2czd B: [131046]
        automated match to d2cz5a1
        complexed with dtt, gol
    3. Domains for 2cze:
      1. 2079259Domain d2czea_: 2cze A: [131047]
        automated match to d2cz5a1
        complexed with cit, gol, u5p
      2. 2079260Domain d2czeb_: 2cze B: [131048]
        automated match to d2cz5a1
        complexed with cit, gol, u5p
    4. Domains for 2czf:
      1. 2079263Domain d2czfa_: 2czf A: [131049]
        automated match to d2cz5a1
        complexed with xmp
      2. 2079264Domain d2czfb_: 2czf B: [131050]
        automated match to d2cz5a1
        complexed with xmp
  7. 2079265Thermotoga maritima [TaxId:2336] [141746] (1 PDB entry)
    Uniprot Q9WYG7 1-198

More info for Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase

Timeline for Protein Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) from c.1.2.3: Decarboxylase: