Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1122537Fold b.36: PDZ domain-like [50155] (1 superfamily)
    contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
  4. 1122538Superfamily b.36.1: PDZ domain-like [50156] (7 families) (S)
    peptide-binding domain
  5. 1122539Family b.36.1.1: PDZ domain [50157] (47 proteins)
    Pfam PF00595
  6. 1122830Protein automated matches [190055] (6 species)
    not a true protein

Species:

  1. 1122831African clawed frog (Xenopus laevis) [TaxId:8355] [187076] (1 PDB entry)
  2. 1122834Homo sapiens, influenza a virus [TaxId:9606] [193650] (1 PDB entry)
  3. 1122836Human (Homo sapiens) [TaxId:9606] [187785] (15 PDB entries)
    1. Domain for 2h2b:
    2. Domain for 2h2c:
    3. Domain for 2h3m:
    4. Domain for 2he4:
    5. Domain for 2ocs:
    6. Domain for 2ozf:
    7. Domain for 2pa1:
    8. Domain for 2pkt:
    9. Domains for 2vph:
      1. 1122848Domain d2vpha_: 2vph A: [168757]
        automated match to d2cs5a1
      2. 1122849Domain d2vphb_: 2vph B: [168758]
        automated match to d2cs5a1
    10. Domains for 2vrf:
      1. 1122851Domain d2vrfa_: 2vrf A: [168768]
        automated match to d1qava_
        complexed with edo
      2. 1122852Domain d2vrfb_: 2vrf B: [168769]
        automated match to d1qava_
        complexed with edo
      3. 1122853Domain d2vrfc_: 2vrf C: [168770]
        automated match to d1qava_
        complexed with edo
      4. 1122854Domain d2vrfd_: 2vrf D: [168771]
        automated match to d1qava_
        complexed with edo
    11. Domain for 2w4f:
    12. Domain for 2x7z:
    13. Domains for 3i4w:
      1. 1122839Domain d3i4wa_: 3i4w A: [178090]
        automated match to d1tp3a1
        complexed with act
      2. 1122840Domain d3i4wb_: 3i4w B: [178091]
        automated match to d1tp3a1
        complexed with act
      3. 1122841Domain d3i4wc_: 3i4w C: [178092]
        automated match to d1tp3a1
        complexed with act
      4. 1122842Domain d3i4wd_: 3i4w D: [178093]
        automated match to d1tp3a1
        complexed with act
    14. Domains for 3rl7:
      1. 1122861Domain d3rl7a_: 3rl7 A: [185006]
        automated match to d1zoka1
      2. 1122862Domain d3rl7b_: 3rl7 B: [185007]
        automated match to d1zoka1
      3. 1122863Domain d3rl7c_: 3rl7 C: [185008]
        automated match to d1zoka1
      4. 1122864Domain d3rl7d_: 3rl7 D: [185009]
        automated match to d1zoka1
      5. 1122865Domain d3rl7e_: 3rl7 E: [185010]
        automated match to d1zoka1
      6. 1122866Domain d3rl7f_: 3rl7 F: [185011]
        automated match to d1zoka1
    15. Domains for 3rl8:
      1. 1122856Domain d3rl8a_: 3rl8 A: [185012]
        automated match to d1qlca_
      2. 1122857Domain d3rl8b_: 3rl8 B: [185013]
        automated match to d1qlca_
      3. 1122858Domain d3rl8c_: 3rl8 C: [185014]
        automated match to d1qlca_
      4. 1122859Domain d3rl8d_: 3rl8 D: [185015]
        automated match to d1qlca_
      5. 1122860Domain d3rl8e_: 3rl8 E: [185016]
        automated match to d1qlca_
  4. 1122868Mouse (Mus musculus) [TaxId:10090] [189198] (2 PDB entries)
    1. Domain for 2wl7:
    2. Domains for 3o5n:
      1. 1122870Domain d3o5na_: 3o5n A: [182807]
        automated match to d1q3ob_
        complexed with br0
      2. 1122871Domain d3o5nb_: 3o5n B: [182808]
        automated match to d1q3ob_
        complexed with br0
      3. 1122872Domain d3o5nc_: 3o5n C: [182809]
        automated match to d1q3ob_
        complexed with br0
      4. 1122873Domain d3o5nd_: 3o5n D: [182810]
        automated match to d1q3ob_
        complexed with br0
      5. 1122874Domain d3o5ne_: 3o5n E: [182811]
        automated match to d1q3ob_
        complexed with br0
      6. 1122875Domain d3o5nf_: 3o5n F: [182812]
        automated match to d1q3ob_
        complexed with br0
      7. 1122876Domain d3o5ng_: 3o5n G: [182813]
        automated match to d1q3ob_
        complexed with br0
      8. 1122877Domain d3o5nh_: 3o5n H: [182814]
        automated match to d1q3ob_
        complexed with br0
  5. 1122878Mus musculus, [TaxId:10090] [195551] (1 PDB entry)
  6. 1122880Norway rat (Rattus norvegicus) [TaxId:10116] [186775] (7 PDB entries)
    1. Domain for 1tp5:
    2. Domains for 2awu:
      1. 1122885Domain d2awua_: 2awu A: [162931]
        automated match to d1qlca_
      2. 1122886Domain d2awub_: 2awu B: [162932]
        automated match to d1qlca_
    3. Domains for 2aww:
      1. 1122887Domain d2awwa_: 2aww A: [162933]
        automated match to d1qlca_
      2. 1122888Domain d2awwb_: 2aww B: [162934]
        automated match to d1qlca_
    4. Domains for 2awx:
      1. 1122883Domain d2awxa_: 2awx A: [162935]
        automated match to d1qlca_
        complexed with his
      2. 1122884Domain d2awxb_: 2awx B: [162936]
        automated match to d1qlca_
        complexed with his
    5. Domains for 2g2l:
      1. 1122889Domain d2g2la_: 2g2l A: [164562]
        automated match to d1qlca_
      2. 1122890Domain d2g2lb_: 2g2l B: [164563]
        automated match to d1qlca_
    6. Domains for 2i0l:
      1. 1122891Domain d2i0la_: 2i0l A: [165356]
        automated match to d1qlca_
      2. 1122892Domain d2i0lb_: 2i0l B: [165357]
        automated match to d1qlca_
    7. Domain for 4h11:

More info for Protein automated matches from b.36.1.1: PDZ domain

Timeline for Protein automated matches from b.36.1.1: PDZ domain: