Online resources of potential interest to SCOPe users

  • SCOP2 prototype of a new structural classification of proteins

  • Structural alignments for proteins with non-trivial relationships (SISYPHUS)
  • Hidden Markov Model library for SCOP superfamilies (SUPERFAMILY)

  • Structural similarity search of older version of SCOP using SSM (now PDBeFold)
  • Combinatorial Extension (CE) method for structural comparison
  • PALI pairwise and multiple alignments of SCOP and SCOPe families
  • PASS2 automated structural alignments of SCOP superfamilies
  • SUPFAM structure/sequence relationships
  • Stuctural alignment of SCOP sequences (database + server)

  • Sequence similarity search of SCOP using FPS
  • Universal Protein Resource (UniProt)
  • Pfam database of protein families and HMMs
  • Integrated resource for protein families (InterPro)

  • CATH/Gene3D structural and evolutionary classification
  • ECOD evolutionary classification of protein domains
  • Dali structural comparison and FSSP structural classification
  • 3Dee Protein Domain Definitions

  • Protein Data Bank (PDB)
  • Macromolecular Structure Database (EBI)
  • Nucleic Acid Database (NDB)

  • Swiss-Model
  • Macromolecular Motions Database

  • Genome Census
  • Function assignment and metabolic models