SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.5: MurCD N-terminal domain [51983] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; incomplete Rossmann-like fold; binds UDP group
Superfamily c.5.1: MurCD N-terminal domain [51984] (2 families)
Family c.5.1.0: automated matches [254240] (1 protein)
not a true family
Protein automated matches [254548] (7 species)
not a true protein

Species:

Acinetobacter baumannii [TaxId:470] [350525] (1 PDB entry)
- Domain for 6cau:
  - Domain d6caua1: 6cau A:19-110 [350526]
    Other proteins in same PDB: d6caua2, d6caua3
    automated match to d1gqqa1
    complexed with anp, mg
Escherichia coli [TaxId:562] [255257] (8 PDB entries)
1. Domain for 2jff:
  - Domain d2jffa1: 2jff A:1-93 [138303]
    Other proteins in same PDB: d2jffa2, d2jffa3, d2jffa4
    automated match to d2jfga1
    complexed with lk2, so4
2. Domain for 2jfg:
  - Domain d2jfga1: 2jfg A:1-93 [138306]
    Other proteins in same PDB: d2jfga2, d2jfga3, d2jfga4
    automated match to d2jfga1
    complexed with adp, so4, uma
3. Domain for 2jfh:
  - Domain d2jfha1: 2jfh A:1-93 [138309]
    Other proteins in same PDB: d2jfha2, d2jfha3, d2jfha4
    automated match to d2jfga1
    complexed with lk1, so4
4. Domain for 2uuo:
  - Domain d2uuoa1: 2uuo A:1-93 [152197]
    Other proteins in same PDB: d2uuoa2, d2uuoa3, d2uuoa4
    automated match to d4uaga1
    complexed with lk3, so4
5. Domain for 2uup:
  - Domain d2uupa1: 2uup A:1-93 [152200]
    Other proteins in same PDB: d2uupa2, d2uupa3, d2uupa4
    automated match to d4uaga1
    complexed with lk4, so4
6. Domain for 2vtd:
  - Domain d2vtda1: 2vtd A:1-93 [243939]
    Other proteins in same PDB: d2vtda2, d2vtda3, d2vtda4
    automated match to d4uaga1
    complexed with lkm, so4
7. Domain for 2vte:
  - Domain d2vtea1: 2vte A:1-93 [243942]
    Other proteins in same PDB: d2vtea2, d2vtea3, d2vtea4
    automated match to d4uaga1
    complexed with ik4, so4
8. Domain for 2xpc:
  - Domain d2xpca1: 2xpc A:1-93 [244565]
    Other proteins in same PDB: d2xpca2, d2xpca3, d2xpca4
    automated match to d4uaga1
    complexed with 051, cl, dms, so4
Escherichia coli [TaxId:668369] [255649] (2 PDB entries)
1. Domain for 2wjp:
  - Domain d2wjpa1: 2wjp A:1-93 [244147]
    Other proteins in same PDB: d2wjpa2, d2wjpa3, d2wjpa4
    automated match to d4uaga1
    complexed with azi, cl, d17, dms, so4
2. Domain for 2x5o:
  - Domain d2x5oa1: 2x5o A:1-93 [244425]
    Other proteins in same PDB: d2x5oa2, d2x5oa3, d2x5oa4
    automated match to d4uaga1
    complexed with azi, cl, so3, so4, vsv
Escherichia coli [TaxId:83333] [316487] (1 PDB entry)
- Domain for 5a5f:
  - Domain d5a5fa1: 5a5f A:1-93 [316488]
    Other proteins in same PDB: d5a5fa2, d5a5fa3, d5a5fa4
    automated match to d4uaga1
    complexed with adp, mli, uma
Neisseria meningitidis [TaxId:122586] [346278] (1 PDB entry)
- Domains for 3eag:
  1. Domain d3eaga1: 3eag A:1-92 [344704]
    Other proteins in same PDB: d3eaga2, d3eaga3, d3eagb2, d3eagb3
    automated match to d5vvwa1
    complexed with gol
  2. Domain d3eagb1: 3eag B:1-92 [344707]
    Other proteins in same PDB: d3eaga2, d3eaga3, d3eagb2, d3eagb3
    automated match to d5vvwa1
    complexed with gol

Pseudomonas aeruginosa [TaxId:208964] [334946] (3 PDB entries)

Domains for 5vvw:

Domain d5vvwa1: 5vvw A:16-103 [334988]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domain d5vvwb1: 5vvw B:16-103 [335034]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domain d5vvwc1: 5vvw C:16-103 [334947]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domain d5vvwd1: 5vvw D:16-103 [334980]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domain d5vvwe1: 5vvw E:16-103 [334953]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domain d5vvwf1: 5vvw F:16-103 [334963]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domain d5vvwg1: 5vvw G:16-103 [335016]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domain d5vvwh1: 5vvw H:16-103 [334991]
Other proteins in same PDB: d5vvwa2, d5vvwa3, d5vvwb2, d5vvwb3, d5vvwc2, d5vvwc3, d5vvwd2, d5vvwd3, d5vvwe2, d5vvwe3, d5vvwf2, d5vvwf3, d5vvwg2, d5vvwg3, d5vvwh2, d5vvwh3
automated match to d4hv4a1
complexed with edo

Domains for 6x9f:

Domain d6x9fa1: 6x9f A:9-96 [393363]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domain d6x9fb1: 6x9f B:9-96 [393273]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domain d6x9fc1: 6x9f C:9-96 [393276]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domain d6x9fd1: 6x9f D:9-96 [393298]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domain d6x9fe1: 6x9f E:9-96 [393265]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domain d6x9ff1: 6x9f F:9-96 [393255]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domain d6x9fg1: 6x9f G:9-96 [393250]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domain d6x9fh1: 6x9f H:9-96 [393259]
Other proteins in same PDB: d6x9fa2, d6x9fa3, d6x9fb2, d6x9fb3, d6x9fc2, d6x9fc3, d6x9fd2, d6x9fd3, d6x9fe2, d6x9fe3, d6x9ff2, d6x9ff3, d6x9fg2, d6x9fg3, d6x9fh2, d6x9fh3
automated match to d4hv4a1
complexed with cl, dms, edo, uxp

Domains for 6x9n:

Domain d6x9na1: 6x9n A:16-103 [393242]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Domain d6x9nb1: 6x9n B:16-103 [393346]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Domain d6x9nc1: 6x9n C:16-103 [393246]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Domain d6x9nd1: 6x9n D:16-103 [393216]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Domain d6x9ne1: 6x9n E:16-103 [393281]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Domain d6x9nf1: 6x9n F:16-103 [393223]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Domain d6x9ng1: 6x9n G:16-103 [393239]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Domain d6x9nh1: 6x9n H:16-103 [393232]
Other proteins in same PDB: d6x9na2, d6x9na3, d6x9nb2, d6x9nb3, d6x9nc2, d6x9nc3, d6x9nd2, d6x9nd3, d6x9ne2, d6x9ne3, d6x9nf2, d6x9nf3, d6x9ng2, d6x9ng3, d6x9nh2, d6x9nh3
automated match to d4hv4a1
complexed with cl, dms, edo, uyd, val

Yersinia pestis [TaxId:214092] [256290] (1 PDB entry)
- Domains for 4hv4:
  1. Domain d4hv4a1: 4hv4 A:19-107 [252518]
    Other proteins in same PDB: d4hv4a2, d4hv4a3, d4hv4b2, d4hv4b3
    automated match to d1gqqa1
    complexed with amp, bme
  2. Domain d4hv4b1: 4hv4 B:15-107 [252521]
    Other proteins in same PDB: d4hv4a2, d4hv4a3, d4hv4b2, d4hv4b3
    automated match to d1gqqa1
    complexed with amp, bme

More info for Protein automated matches from c.5.1.0: automated matches

Timeline for Protein automated matches from c.5.1.0: automated matches:

Protein automated matches from c.5.1.0: automated matches first appeared in SCOPe 2.04
Protein automated matches from c.5.1.0: automated matches appears in SCOPe 2.07