SCOPe 2.08: Protein: Histidyl-tRNA synthetase (HisRS)

Lineage for Protein: Histidyl-tRNA synthetase (HisRS)

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
contains large mixed beta-sheet
Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families)
Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain [55682] (16 proteins)
Protein Histidyl-tRNA synthetase (HisRS) [55688] (4 species)

Species:

Escherichia coli [TaxId:562] [55689] (4 PDB entries)
1. Domains for 1htt:
  1. Domain d1htta2: 1htt A:4-325 [40727]
    Other proteins in same PDB: d1htta1, d1httb1, d1httc1, d1httd1
    protein/RNA complex; complexed with amp, his
  2. Domain d1httb2: 1htt B:4-325 [40728]
    Other proteins in same PDB: d1htta1, d1httb1, d1httc1, d1httd1
    protein/RNA complex; complexed with amp, his
  3. Domain d1httc2: 1htt C:4-325 [40729]
    Other proteins in same PDB: d1htta1, d1httb1, d1httc1, d1httd1
    protein/RNA complex; complexed with amp, his
  4. Domain d1httd2: 1htt D:4-325 [40730]
    Other proteins in same PDB: d1htta1, d1httb1, d1httc1, d1httd1
    protein/RNA complex; complexed with amp, his
2. Domains for 1kmm:
  1. Domain d1kmma2: 1kmm A:4-325 [40723]
    Other proteins in same PDB: d1kmma1, d1kmmb1, d1kmmc1, d1kmmd1
    protein/RNA complex; complexed with ham
  2. Domain d1kmmb2: 1kmm B:2-325 [40724]
    Other proteins in same PDB: d1kmma1, d1kmmb1, d1kmmc1, d1kmmd1
    protein/RNA complex; complexed with ham
  3. Domain d1kmmc2: 1kmm C:4-325 [40725]
    Other proteins in same PDB: d1kmma1, d1kmmb1, d1kmmc1, d1kmmd1
    protein/RNA complex; complexed with ham
  4. Domain d1kmmd2: 1kmm D:4-325 [40726]
    Other proteins in same PDB: d1kmma1, d1kmmb1, d1kmmc1, d1kmmd1
    protein/RNA complex; complexed with ham
3. Domains for 1kmn:
  1. Domain d1kmna2: 1kmn A:4-325 [40731]
    Other proteins in same PDB: d1kmna1, d1kmnb1, d1kmnc1, d1kmnd1
    protein/RNA complex; complexed with atp, hso
  2. Domain d1kmnb2: 1kmn B:3-325 [40732]
    Other proteins in same PDB: d1kmna1, d1kmnb1, d1kmnc1, d1kmnd1
    protein/RNA complex; complexed with atp, hso
  3. Domain d1kmnc2: 1kmn C:4-325 [40733]
    Other proteins in same PDB: d1kmna1, d1kmnb1, d1kmnc1, d1kmnd1
    protein/RNA complex; complexed with atp, hso
  4. Domain d1kmnd2: 1kmn D:2-325 [40734]
    Other proteins in same PDB: d1kmna1, d1kmnb1, d1kmnc1, d1kmnd1
    protein/RNA complex; complexed with atp, hso
4. Domains for 2el9:
  1. Domain d2el9a2: 2el9 A:3-325 [146888]
    Other proteins in same PDB: d2el9a1, d2el9b1, d2el9c1, d2el9d1
    automated match to d1kmma2
    protein/RNA complex; complexed with hss
  2. Domain d2el9b2: 2el9 B:4-325 [146890]
    Other proteins in same PDB: d2el9a1, d2el9b1, d2el9c1, d2el9d1
    automated match to d1kmma2
    protein/RNA complex; complexed with hss
  3. Domain d2el9c2: 2el9 C:3-325 [146892]
    Other proteins in same PDB: d2el9a1, d2el9b1, d2el9c1, d2el9d1
    automated match to d1kmma2
    protein/RNA complex; complexed with hss
  4. Domain d2el9d2: 2el9 D:4-325 [146894]
    Other proteins in same PDB: d2el9a1, d2el9b1, d2el9c1, d2el9d1
    automated match to d1kmma2
    protein/RNA complex; complexed with hss
Staphylococcus aureus [TaxId:1280] [55690] (1 PDB entry)
- Domains for 1qe0:
  1. Domain d1qe0a2: 1qe0 A:1-325 [40735]
    Other proteins in same PDB: d1qe0a1, d1qe0b1
  2. Domain d1qe0b2: 1qe0 B:1-325 [40736]
    Other proteins in same PDB: d1qe0a1, d1qe0b1
Thermoplasma acidophilum [TaxId:2303] [143637] (1 PDB entry)
Uniprot Q9HLX5 3-329
- Domains for 1wu7:
  1. Domain d1wu7a2: 1wu7 A:3-329 [121276]
    Other proteins in same PDB: d1wu7a1, d1wu7b1
    has additional subdomain(s) that are not in the common domain
  2. Domain d1wu7b2: 1wu7 B:5-329 [121278]
    Other proteins in same PDB: d1wu7a1, d1wu7b1
    automated match to d1wu7a2
    has additional subdomain(s) that are not in the common domain

Thermus thermophilus [TaxId:274] [55691] (3 PDB entries)

Domains for 1adj:

Domain d1adja2: 1adj A:2-325 [40737]
Other proteins in same PDB: d1adja1, d1adjb1, d1adjc1, d1adjd1
protein/RNA complex; complexed with his, so4
has additional subdomain(s) that are not in the common domain

Domain d1adjb2: 1adj B:2-325 [40738]
Other proteins in same PDB: d1adja1, d1adjb1, d1adjc1, d1adjd1
protein/RNA complex; complexed with his, so4
has additional subdomain(s) that are not in the common domain

Domain d1adjc2: 1adj C:2-325 [40739]
Other proteins in same PDB: d1adja1, d1adjb1, d1adjc1, d1adjd1
protein/RNA complex; complexed with his, so4
has additional subdomain(s) that are not in the common domain

Domain d1adjd2: 1adj D:2-325 [40740]
Other proteins in same PDB: d1adja1, d1adjb1, d1adjc1, d1adjd1
protein/RNA complex; complexed with his, so4
has additional subdomain(s) that are not in the common domain

Domains for 1ady:

Domain d1adya2: 1ady A:2-325 [40741]
Other proteins in same PDB: d1adya1, d1adyb1, d1adyc1, d1adyd1
protein/RNA complex; complexed with ham, so4
has additional subdomain(s) that are not in the common domain

Domain d1adyb2: 1ady B:2-325 [40742]
Other proteins in same PDB: d1adya1, d1adyb1, d1adyc1, d1adyd1
protein/RNA complex; complexed with ham, so4
has additional subdomain(s) that are not in the common domain

Domain d1adyc2: 1ady C:2-325 [40743]
Other proteins in same PDB: d1adya1, d1adyb1, d1adyc1, d1adyd1
protein/RNA complex; complexed with ham, so4
has additional subdomain(s) that are not in the common domain

Domain d1adyd2: 1ady D:2-325 [40744]
Other proteins in same PDB: d1adya1, d1adyb1, d1adyc1, d1adyd1
protein/RNA complex; complexed with ham, so4
has additional subdomain(s) that are not in the common domain

Domain for 1h4v:
- Domain d1h4vb2: 1h4v B:2-325 [60625]
  Other proteins in same PDB: d1h4vb1
  complexed with so4
  has additional subdomain(s) that are not in the common domain

More info for Protein Histidyl-tRNA synthetase (HisRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Timeline for Protein Histidyl-tRNA synthetase (HisRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain:

Protein Histidyl-tRNA synthetase (HisRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Histidyl-tRNA synthetase (HisRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalyic domain
Protein Histidyl-tRNA synthetase (HisRS) from d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain appears in SCOPe 2.07