SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class f: Membrane and cell surface proteins and peptides [56835] (59 folds)
Fold f.6: Leukocidin-like [56958] (1 superfamily)
subunit fold contains beta-sandwich of Ig-like (grerk-key) topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel
Superfamily f.6.1: Leukocidin-like [56959] (3 families)
Family f.6.1.0: automated matches [227293] (1 protein)
not a true family
Protein automated matches [227114] (5 species)
not a true protein

Species:

Clostridium perfringens [TaxId:1502] [226621] (2 PDB entries)
1. Domain for 2ygt:
  - Domain d2ygta1: 2ygt A:9-290 [231620]
    Other proteins in same PDB: d2ygta2
    automated match to d4i0na_
    complexed with gol, imd, zn
2. Domain for 4i0n:
  - Domain d4i0na_: 4i0n A: [222828]
    automated match to d1t5ra_
    complexed with edo, mg
Staphylococcus aureus [TaxId:158878] [259901] (2 PDB entries)
1. Domains for 4p1x:
  1. Domain d4p1xb_: 4p1x B: [260346]
    Other proteins in same PDB: d4p1xa_, d4p1xc_, d4p1xe_, d4p1xg_
    automated match to d4iyca_
    complexed with mpd
  2. Domain d4p1xd_: 4p1x D: [259903]
    Other proteins in same PDB: d4p1xa_, d4p1xc_, d4p1xe_, d4p1xg_
    automated match to d4iyca_
    complexed with mpd
  3. Domain d4p1xf_: 4p1x F: [259902]
    Other proteins in same PDB: d4p1xa_, d4p1xc_, d4p1xe_, d4p1xg_
    automated match to d4iyca_
    complexed with mpd
  4. Domain d4p1xh_: 4p1x H: [263415]
    Other proteins in same PDB: d4p1xa_, d4p1xc_, d4p1xe_, d4p1xg_
    automated match to d4iyca_
    complexed with mpd
2. Domains for 4p1y:
  1. Domain d4p1yb1: 4p1y B:13-280 [259905]
    Other proteins in same PDB: d4p1ya_, d4p1yb2, d4p1yc_, d4p1yd2, d4p1ye_, d4p1yf2, d4p1yg_, d4p1yh2
    automated match to d4iyaa_
  2. Domain d4p1yd1: 4p1y D:13-280 [260349]
    Other proteins in same PDB: d4p1ya_, d4p1yb2, d4p1yc_, d4p1yd2, d4p1ye_, d4p1yf2, d4p1yg_, d4p1yh2
    automated match to d4iyaa_
  3. Domain d4p1yf1: 4p1y F:13-280 [263417]
    Other proteins in same PDB: d4p1ya_, d4p1yb2, d4p1yc_, d4p1yd2, d4p1ye_, d4p1yf2, d4p1yg_, d4p1yh2
    automated match to d4p1yb_
  4. Domain d4p1yh1: 4p1y H:13-280 [263419]
    Other proteins in same PDB: d4p1ya_, d4p1yb2, d4p1yc_, d4p1yd2, d4p1ye_, d4p1yf2, d4p1yg_, d4p1yh2
    automated match to d4p1yb_
Staphylococcus aureus [TaxId:367830] [321099] (1 PDB entry)
- Domains for 5k59:
  1. Domain d5k59a_: 5k59 A: [321106]
    Other proteins in same PDB: d5k59f1, d5k59f2, d5k59l1, d5k59l2
    automated match to d3lkfa_
    complexed with cl, pg4, po4
  2. Domain d5k59b_: 5k59 B: [321208]
    Other proteins in same PDB: d5k59f1, d5k59f2, d5k59l1, d5k59l2
    automated match to d3lkfa_
    complexed with cl, pg4, po4
  3. Domain d5k59c_: 5k59 C: [321100]
    Other proteins in same PDB: d5k59f1, d5k59f2, d5k59l1, d5k59l2
    automated match to d4tw1b_
    complexed with cl, pg4, po4
  4. Domain d5k59d_: 5k59 D: [321170]
    Other proteins in same PDB: d5k59f1, d5k59f2, d5k59l1, d5k59l2
    automated match to d4tw1b_
    complexed with cl, pg4, po4
Staphylococcus aureus [TaxId:451516] [260976] (1 PDB entry)
- Domains for 4tw1:
  1. Domain d4tw1a_: 4tw1 A: [260977]
    automated match to d2qk7b_
  2. Domain d4tw1b_: 4tw1 B: [260978]
    automated match to d3b07a_
  3. Domain d4tw1c_: 4tw1 C: [261162]
    automated match to d2qk7b_
  4. Domain d4tw1d_: 4tw1 D: [261163]
    automated match to d3b07a_
  5. Domain d4tw1e_: 4tw1 E: [271248]
    automated match to d3lkfa_
  6. Domain d4tw1f_: 4tw1 F: [271253]
    automated match to d4tw1b_
  7. Domain d4tw1g_: 4tw1 G: [271246]
    automated match to d3lkfa_
  8. Domain d4tw1h_: 4tw1 H: [271256]
    automated match to d4tw1b_
  9. Domain d4tw1i_: 4tw1 I: [271254]
    automated match to d3lkfa_
  10. Domain d4tw1j_: 4tw1 J: [271252]
    automated match to d4tw1b_
  11. Domain d4tw1k_: 4tw1 K: [271255]
    automated match to d3lkfa_
  12. Domain d4tw1l_: 4tw1 L: [271257]
    automated match to d4tw1b_
  13. Domain d4tw1m_: 4tw1 M: [271249]
    automated match to d3lkfa_
  14. Domain d4tw1n_: 4tw1 N: [271250]
    automated match to d4tw1b_
  15. Domain d4tw1o_: 4tw1 O: [271247]
    automated match to d3lkfa_
  16. Domain d4tw1p_: 4tw1 P: [271251]
    automated match to d4tw1b_
Staphylococcus phage [TaxId:71366] [236419] (5 PDB entries)
1. Domain for 4iya:
  - Domain d4iyaa_: 4iya A: [236421]
    automated match to d3lkfa_
    complexed with edo, flc; mutant
2. Domains for 4iyc:
  1. Domain d4iyca_: 4iyc A: [236420]
    automated match to d3lkfa_
    mutant
  2. Domain d4iycb_: 4iyc B: [237575]
    automated match to d4iyca_
    mutant
  3. Domain d4iycc_: 4iyc C: [237574]
    automated match to d4iyca_
    mutant
  4. Domain d4iycd_: 4iyc D: [237576]
    automated match to d4iyca_
    mutant
3. Domain for 4iyt:
  - Domain d4iyta_: 4iyt A: [236422]
    automated match to d3lkfa_
    complexed with mes; mutant
4. Domains for 4izl:
  1. Domain d4izla_: 4izl A: [236423]
    automated match to d3lkfa_
    mutant
  2. Domain d4izlb_: 4izl B: [236424]
    automated match to d3lkfa_
    mutant
  3. Domain d4izlc_: 4izl C: [237577]
    automated match to d4izla_
    mutant
  4. Domain d4izld_: 4izl D: [237591]
    automated match to d4izla_
    mutant
5. Domains for 4j0o:
  1. Domain d4j0oa_: 4j0o A: [236425]
    automated match to d3lkfa_
    mutant
  2. Domain d4j0ob_: 4j0o B: [237594]
    automated match to d4j0oa_
    mutant
  3. Domain d4j0oc_: 4j0o C: [237592]
    automated match to d4j0oa_
    mutant
  4. Domain d4j0od_: 4j0o D: [237593]
    automated match to d4j0oa_
    mutant

More info for Protein automated matches from f.6.1.0: automated matches

Timeline for Protein automated matches from f.6.1.0: automated matches:

Protein automated matches from f.6.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from f.6.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from f.6.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from f.6.1.0: automated matches appears in the current release, SCOPe 2.08