SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.109: Gelsolin-like [55752] (3 superfamilies)
3 layers: a/b/a; contains mixed beta-sheet
Superfamily d.109.1: Actin depolymerizing proteins [55753] (3 families)
Family d.109.1.0: automated matches [191561] (1 protein)
not a true family
Protein automated matches [190971] (12 species)
not a true protein

Species:

Fruit fly (Drosophila melanogaster) [TaxId:7227] [277269] (1 PDB entry)
- Domain for 2mv2:
  - Domain d2mv2a_: 2mv2 A: [277270]
    automated match to d2lxxa_
Horse (Equus caballus) [TaxId:9796] [255171] (1 PDB entry)
- Domains for 2fgh:
  1. Domain d2fgha1: 2fgh A:27-152 [241838]
    automated match to d1d0na1
    complexed with atp
  2. Domain d2fgha2: 2fgh A:153-258 [241839]
    automated match to d1d0na2
    complexed with atp
  3. Domain d2fgha3: 2fgh A:267-383 [241840]
    automated match to d1d0na3
    complexed with atp
  4. Domain d2fgha4: 2fgh A:384-532 [241841]
    automated match to d1d0na4
    complexed with atp
  5. Domain d2fgha5: 2fgh A:533-628 [241842]
    automated match to d1d0na5
    complexed with atp
  6. Domain d2fgha6: 2fgh A:629-755 [241843]
    automated match to d1d0na6
    complexed with atp
  7. Domain d2fghb1: 2fgh B:27-152 [241844]
    automated match to d1d0na1
    complexed with atp
  8. Domain d2fghb2: 2fgh B:153-258 [241845]
    automated match to d1d0na2
    complexed with atp
  9. Domain d2fghb3: 2fgh B:267-383 [241846]
    automated match to d1d0na3
    complexed with atp
  10. Domain d2fghb4: 2fgh B:384-532 [241847]
    automated match to d1d0na4
    complexed with atp
  11. Domain d2fghb5: 2fgh B:533-628 [241848]
    automated match to d1d0na5
    complexed with atp
  12. Domain d2fghb6: 2fgh B:629-755 [241849]
    automated match to d1d0na6
    complexed with atp
Human (Homo sapiens) [TaxId:9606] [188619] (3 PDB entries)
1. Domains for 2fh4:
  1. Domain d2fh4a1: 2fh4 A:412-532 [133468]
    automated match to d1npha1
  2. Domain d2fh4a2: 2fh4 A:533-628 [133469]
    automated match to d1npha2
  3. Domain d2fh4a3: 2fh4 A:629-741 [133470]
    automated match to d1npha3
  4. Domain d2fh4b1: 2fh4 B:414-532 [133471]
    automated match to d1npha1
  5. Domain d2fh4b2: 2fh4 B:533-628 [133472]
    automated match to d1npha2
  6. Domain d2fh4b3: 2fh4 B:629-741 [133473]
    automated match to d1npha3
  7. Domain d2fh4c1: 2fh4 C:414-532 [133474]
    automated match to d1npha1
  8. Domain d2fh4c2: 2fh4 C:533-628 [133475]
    automated match to d1npha2
  9. Domain d2fh4c3: 2fh4 C:629-741 [133476]
    automated match to d1npha3
2. Domain for 2w0i:
  - Domain d2w0ia_: 2w0i A: [168981]
    automated match to d1vkka_
3. Domains for 3fg6:
  1. Domain d3fg6a1: 3fg6 A:396-494 [246130]
    automated match to d1npha1
    complexed with ca
  2. Domain d3fg6a2: 3fg6 A:511-603 [246131]
    automated match to d1npha2
    complexed with ca
  3. Domain d3fg6a3: 3fg6 A:604-715 [246132]
    automated match to d1npha3
    complexed with ca
  4. Domain d3fg6b1: 3fg6 B:396-494 [246133]
    automated match to d1npha1
    complexed with ca
  5. Domain d3fg6b2: 3fg6 B:511-603 [246134]
    automated match to d1npha2
    complexed with ca
  6. Domain d3fg6b3: 3fg6 B:604-715 [246135]
    automated match to d1npha3
    complexed with ca
  7. Domain d3fg6c1: 3fg6 C:396-494 [246136]
    automated match to d1npha1
    complexed with ca
  8. Domain d3fg6c2: 3fg6 C:511-603 [246137]
    automated match to d1npha2
    complexed with ca
  9. Domain d3fg6c3: 3fg6 C:604-712 [246138]
    automated match to d1npha3
    complexed with ca
  10. Domain d3fg6d1: 3fg6 D:396-494 [246139]
    automated match to d1npha1
    complexed with ca
  11. Domain d3fg6d2: 3fg6 D:511-603 [246140]
    automated match to d1npha2
    complexed with ca
  12. Domain d3fg6d3: 3fg6 D:604-712 [246141]
    automated match to d1npha3
    complexed with ca
  13. Domain d3fg6e1: 3fg6 E:396-494 [246142]
    automated match to d1npha1
    complexed with ca
  14. Domain d3fg6e2: 3fg6 E:511-603 [246143]
    automated match to d1npha2
    complexed with ca
  15. Domain d3fg6e3: 3fg6 E:613-715 [246144]
    automated match to d1npha3
    complexed with ca
  16. Domain d3fg6f1: 3fg6 F:396-494 [246145]
    automated match to d1npha1
    complexed with ca
  17. Domain d3fg6f2: 3fg6 F:511-603 [246146]
    automated match to d1npha2
    complexed with ca
  18. Domain d3fg6f3: 3fg6 F:604-715 [246147]
    automated match to d1npha3
    complexed with ca
  19. Domain d3fg6g1: 3fg6 G:396-494 [246148]
    automated match to d1npha1
    complexed with ca
  20. Domain d3fg6g2: 3fg6 G:511-603 [246149]
    automated match to d1npha2
    complexed with ca
  21. Domain d3fg6g3: 3fg6 G:604-715 [246150]
    automated match to d1npha3
    complexed with ca
  22. Domain d3fg6h1: 3fg6 H:396-494 [246151]
    automated match to d1npha1
    complexed with ca
  23. Domain d3fg6h2: 3fg6 H:511-603 [246152]
    automated match to d1npha2
    complexed with ca
  24. Domain d3fg6h3: 3fg6 H:604-715 [246153]
    automated match to d1npha3
    complexed with ca
Leishmania donovani [TaxId:5661] [255381] (2 PDB entries)
1. Domain for 2kd5:
  - Domain d2kd5a1: 2kd5 A:1-142 [304158]
    Other proteins in same PDB: d2kd5a2
    automated match to d2kvka_
2. Domain for 2kvk:
  - Domain d2kvka1: 2kvk A:1-142 [242677]
    Other proteins in same PDB: d2kvka2
    automated match to d4kefa_
Malaria parasite (Plasmodium falciparum) [TaxId:5833] [226159] (1 PDB entry)
- Domain for 2xf1:
  - Domain d2xf1a1: 2xf1 A:1-120 [207192]
    Other proteins in same PDB: d2xf1a2
    automated match to d1f7sa_
    complexed with so4
Mouse (Mus musculus) [TaxId:10090] [225486] (2 PDB entries)
1. Domain for 2hd7:
  - Domain d2hd7a1: 2hd7 A:176-316 [242024]
    Other proteins in same PDB: d2hd7a2
    automated match to d3dawb_
2. Domain for 3daw:
  - Domain d3dawb_: 3daw B: [209067]
    Other proteins in same PDB: d3dawa1, d3dawa2
    automated match to d2w0ia_
    complexed with atp, ca
Nematode (Caenorhabditis elegans) [TaxId:6239] [255468] (3 PDB entries)
1. Domain for 2lrb:
  - Domain d2lrba_: 2lrb A: [304187]
    automated match to d2mp4a_
2. Domain for 2lxx:
  - Domain d2lxxa_: 2lxx A: [243031]
    automated match to d4keea_
3. Domain for 2mp4:
  - Domain d2mp4a1: 2mp4 A:1-156 [256451]
    Other proteins in same PDB: d2mp4a2
    automated match to d2lxxa_
Plasmodium berghei [TaxId:5821] [189993] (1 PDB entry)
- Domains for 2xfa:
  1. Domain d2xfaa_: 2xfa A: [170078]
    automated match to d1f7sa_
  2. Domain d2xfab_: 2xfa B: [170079]
    automated match to d1f7sa_
Plasmodium falciparum [TaxId:137071] [226143] (1 PDB entry)
- Domain for 3q2b:
  - Domain d3q2ba_: 3q2b A: [215038]
    automated match to d1f7sa_
    complexed with bme, tar
Streptomyces griseoflavus [TaxId:35619] [332372] (1 PDB entry)
- Domains for 5ivu:
  1. Domain d5ivua_: 5ivu A: [332393]
    automated match to d1tvja_
  2. Domain d5ivub_: 5ivu B: [332373]
    automated match to d1tvja_
Toxoplasma gondii [TaxId:5811] [255410] (1 PDB entry)
- Domain for 2l72:
  - Domain d2l72a_: 2l72 A: [242793]
    automated match to d2xf1a_
Trypanosome (Trypanosoma brucei) [TaxId:5691] [255441] (1 PDB entry)
- Domain for 2lj8:
  - Domain d2lj8a_: 2lj8 A: [242900]
    automated match to d2xfaa_

More info for Protein automated matches from d.109.1.0: automated matches

Timeline for Protein automated matches from d.109.1.0: automated matches:

Protein automated matches from d.109.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from d.109.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.109.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from d.109.1.0: automated matches appears in the current release, SCOPe 2.08