SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
Pfam PF13853. Phylogeny described in PubMed 12761335
Family f.13.1.2: Rhodopsin-like [81320] (2 proteins)
Individual TM segments have a number of kinks and distortions
Protein automated matches [190300] (1 species)
not a true protein

Species:

Cow (Bos taurus) [TaxId:9913] [188510] (18 PDB entries)
1. Domains for 2g87:
  1. Domain d2g87a_: 2g87 A: [134767]
    automated match to d1f88a_
    complexed with hg, htg, hto, plm, ret, zn
  2. Domain d2g87b_: 2g87 B: [134768]
    automated match to d1f88a_
    complexed with hg, htg, hto, plm, ret, zn
2. Domains for 2hpy:
  1. Domain d2hpya_: 2hpy A: [136653]
    automated match to d1f88a_
    complexed with hg, htg, hto, plm, ret, zn
  2. Domain d2hpyb_: 2hpy B: [136654]
    automated match to d1f88a_
    complexed with hg, htg, hto, plm, ret, zn
3. Domains for 2ped:
  1. Domain d2peda_: 2ped A: [167161]
    automated match to d1f88a_
    complexed with hg, htg, hto, plm, ret, zn
  2. Domain d2pedb_: 2ped B: [167162]
    automated match to d1f88a_
    complexed with hg, htg, hto, plm, ret, zn
4. Domain for 3c9l:
  - Domain d3c9la_: 3c9l A: [173095]
    automated match to d1f88a_
    complexed with ace, c8e, lda, pef, plm, ret, zn
5. Domains for 3cap:
  1. Domain d3capa_: 3cap A: [173102]
    automated match to d1f88a_
    complexed with bgl, plm
  2. Domain d3capb_: 3cap B: [173103]
    automated match to d1f88a_
    complexed with bgl, plm
6. Domains for 3oax:
  1. Domain d3oaxa_: 3oax A: [182907]
    automated match to d1f88a_
    complexed with 4e6, hg, htg, hto, id3, plm, ret, zn
  2. Domain d3oaxb_: 3oax B: [182908]
    automated match to d1f88a_
    complexed with 4e6, hg, htg, hto, id3, plm, ret, zn
7. Domain for 3pqr:
  - Domain d3pqra_: 3pqr A: [183927]
    automated match to d1f88a_
    complexed with act, bog, nag, plm, ret, so4
8. Domain for 3pxo:
  - Domain d3pxoa_: 3pxo A: [248730]
    automated match to d1u19a_
    complexed with bog, plm, ret
9. Domain for 5dys:
  - Domain d5dysa_: 5dys A: [321191]
    automated match to d1u19a_
    complexed with act, bog, plm, ret, so4; mutant
10. Domain for 6fk6:
  - Domain d6fk6a_: 6fk6 A: [350686]
    automated match to d5dysa_
    complexed with bog, dok, plm
11. Domain for 6fk7:
  - Domain d6fk7a_: 6fk7 A: [350609]
    automated match to d1l9ha_
    complexed with bog, do5, plm
12. Domain for 6fk8:
  - Domain d6fk8a_: 6fk8 A: [350671]
    automated match to d1l9ha_
    complexed with bog, dnz, plm
13. Domain for 6fk9:
  - Domain d6fk9a_: 6fk9 A: [350636]
    automated match to d1l9ha_
    complexed with bog, dnk, plm
14. Domain for 6fka:
  - Domain d6fkaa_: 6fka A: [350738]
    automated match to d1l9ha_
    complexed with bog, dn5, plm
15. Domain for 6fkb:
  - Domain d6fkba_: 6fkb A: [350657]
    automated match to d1gzma_
    complexed with bma, bog, dlh, man, nag, plm
16. Domain for 6fkc:
  - Domain d6fkca_: 6fkc A: [350606]
    automated match to d1l9ha_
    complexed with bog, dlb, plm
17. Domain for 6fkd:
  - Domain d6fkda_: 6fkd A: [350595]
    automated match to d1l9ha_
    complexed with bog, dl2, plm
18. Domain for 6fuf:
  - Domain d6fufa_: 6fuf A: [358271]
    automated match to d5dysa_
    complexed with nag, ret

More info for Protein automated matches from f.13.1.2: Rhodopsin-like

Timeline for Protein automated matches from f.13.1.2: Rhodopsin-like:

Protein automated matches from f.13.1.2: Rhodopsin-like first appeared in SCOPe 2.01
Protein automated matches from f.13.1.2: Rhodopsin-like appears in SCOPe 2.07