SCOPe 2.08: Domain d3c9la_: 3c9l A:

Lineage for d3c9la_ (3c9l A:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
   Pfam PF13853. Phylogeny described in PubMed 12761335

5. Family f.13.1.2: Rhodopsin-like [81320] (2 proteins)
   Individual TM segments have a number of kinks and distortions

6. Protein automated matches [190300] (1 species)
   not a true protein

7. Species Cow (Bos taurus) [TaxId:9913] [188510] (18 PDB entries)

8. Domain d3c9la_: 3c9l A: [173095]
   automated match to d1f88a_
   complexed with ace, c8e, lda, pef, plm, ret, zn

Details for d3c9la_

PDB Entry: 3c9l, 2.65 Å

PDB Description: structure of ground-state bovine rhodospin in a hexagonal crystal form

PDB Compounds: (A:) rhodopsin

SCOPe Domain Sequences for d3c9la_:

Sequence, based on SEQRES records:

>d3c9la_ f.13.1.2 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgknplgdde

Sequence, based on observed residues (ATOM records):

>d3c9la_ f.13.1.2 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgkndde

Timeline for d3c9la_:

• d3c9la_ first appeared in SCOPe 2.01
  
• d3c9la_ appears in SCOPe 2.07