Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1565956Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1567263Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. 1567264Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)
  6. 1567647Protein automated matches [190228] (14 species)
    not a true protein

Species:

  1. 1567648Geobacillus kaustophilus [TaxId:235909] [257133] (2 PDB entries)
    1. Domains for 4nae:
      1. 1567651Domain d4naea_: 4nae A: [257134]
        automated match to d3vzxb_
        complexed with 1gp, pe4
      2. 1567652Domain d4naeb_: 4nae B: [257135]
        automated match to d3vzya_
        complexed with 1gp, pe4
    2. Domains for 4naf:
      1. 1567649Domain d4nafa_: 4naf A: [257136]
        automated match to d3vzya_
      2. 1567650Domain d4nafb_: 4naf B: [257137]
        automated match to d1viza_
  2. 1567653Human (Homo sapiens) [TaxId:9606] [187000] (8 PDB entries)
    1. Domain for 2bxv:
    2. Domain for 2wv8:
    3. Domain for 3fj6:
    4. Domain for 3fjl:
    5. Domain for 3g0u:
    6. Domain for 3g0x:
    7. Domain for 3zwt:
    8. Domain for 4oqv:
  3. 1567662Lactococcus lactis [TaxId:1358] [186992] (2 PDB entries)
    1. Domains for 2bsl:
      1. 1567665Domain d2bsla_: 2bsl A: [129095]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
      2. 1567666Domain d2bslb_: 2bsl B: [129096]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
    2. Domains for 2bx7:
      1. 1567663Domain d2bx7a_: 2bx7 A: [129395]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
      2. 1567664Domain d2bx7b_: 2bx7 B: [129396]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
  4. 1567667Leishmania donovani [TaxId:5661] [188354] (1 PDB entry)
  5. 1567672Leishmania major [TaxId:347515] [255968] (3 PDB entries)
    1. Domains for 3mhu:
      1. 1567673Domain d3mhua_: 3mhu A: [247707]
        automated match to d3c61a_
        complexed with ejz, fmn, gol, so4
      2. 1567674Domain d3mhub_: 3mhu B: [247708]
        automated match to d3c61a_
        complexed with ejz, fmn, gol, so4
    2. Domains for 3tq0:
      1. 1567675Domain d3tq0a_: 3tq0 A: [249976]
        automated match to d3c61a_
        complexed with fmn, fum, gol, ni, so4
      2. 1567676Domain d3tq0b_: 3tq0 B: [249977]
        automated match to d3c61a_
        complexed with fmn, fum, gol, ni, so4
    3. Domains for 3tro:
      1. 1567677Domain d3troa_: 3tro A: [249994]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
      2. 1567678Domain d3trob_: 3tro B: [249995]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
  6. 1567679Leishmania major [TaxId:5664] [255853] (6 PDB entries)
    1. Domains for 3gye:
      1. 1567690Domain d3gyea_: 3gye A: [246388]
        automated match to d3c61a_
        complexed with fmn, gol
      2. 1567691Domain d3gyeb_: 3gye B: [246389]
        automated match to d3c61a_
        complexed with fmn, gol
    2. Domains for 3gz3:
      1. 1567688Domain d3gz3a_: 3gz3 A: [246394]
        automated match to d3c61a_
        complexed with fmn, gol, oro
      2. 1567689Domain d3gz3b_: 3gz3 B: [246395]
        automated match to d3c61a_
        complexed with fmn, gol, oro
    3. Domains for 3mjy:
      1. 1567686Domain d3mjya_: 3mjy A: [247733]
        automated match to d3c61a_
        complexed with fmn, gol, ijz, so4
      2. 1567687Domain d3mjyb_: 3mjy B: [247734]
        automated match to d3c61a_
        complexed with fmn, gol, ijz, so4
    4. Domains for 3tjx:
      1. 1567684Domain d3tjxa_: 3tjx A: [249919]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
      2. 1567685Domain d3tjxb_: 3tjx B: [249920]
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
    5. Domains for 4ef8:
      1. 1567680Domain d4ef8a_: 4ef8 A: [251739]
        automated match to d3c61a_
        complexed with 0fi, fmn, gol, so4
      2. 1567681Domain d4ef8b_: 4ef8 B: [251740]
        automated match to d3c61a_
        complexed with 0fi, fmn, gol, so4
    6. Domains for 4ef9:
      1. 1567682Domain d4ef9a_: 4ef9 A: [251741]
        automated match to d3c61a_
        complexed with 4nf, fmn, gol, so4
      2. 1567683Domain d4ef9b_: 4ef9 B: [251742]
        automated match to d3c61a_
        complexed with 4nf, fmn, gol, so4
  7. 1567692Norway rat (Rattus norvegicus) [TaxId:10116] [195883] (2 PDB entries)
    1. Domains for 3sgz:
      1. 1567693Domain d3sgza_: 3sgz A: [200657]
        automated match to d3sgzc_
        complexed with fmn, ho6
      2. 1567694Domain d3sgzb_: 3sgz B: [200658]
        automated match to d3sgzc_
        complexed with fmn, ho6
      3. 1567695Domain d3sgzc_: 3sgz C: [195884]
        automated match to d1tb3a1
        complexed with fmn, ho6
    2. Domain for 4ori:
  8. 1567697Plasmodium falciparum [TaxId:36329] [189697] (1 PDB entry)
  9. 1567699Plasmodium falciparum [TaxId:5833] [256645] (1 PDB entry)
  10. 1567702Pseudomonas putida [TaxId:303] [225091] (4 PDB entries)
    1. Domain for 2a7n:
    2. Domain for 2a7p:
    3. Domain for 2a85:
    4. Domain for 3giy:
  11. 1567707Solanum lycopersicum [TaxId:4081] [187823] (5 PDB entries)
    1. Domains for 2hs6:
      1. 1567710Domain d2hs6a_: 2hs6 A: [165230]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
      2. 1567711Domain d2hs6b_: 2hs6 B: [165231]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
    2. Domains for 2hs8:
      1. 1567714Domain d2hs8a_: 2hs8 A: [165232]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. 1567715Domain d2hs8b_: 2hs8 B: [165233]
        automated match to d1q45a_
        complexed with fmn; mutant
    3. Domains for 2hsa:
      1. 1567708Domain d2hsaa_: 2hsa A: [165234]
        automated match to d1q45a_
        complexed with cl, fmn, so4
      2. 1567709Domain d2hsab_: 2hsa B: [165235]
        automated match to d1q45a_
        complexed with cl, fmn, so4
    4. Domains for 3hgo:
      1. 1567716Domain d3hgoa_: 3hgo A: [177552]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. 1567717Domain d3hgob_: 3hgo B: [177553]
        automated match to d1q45a_
        complexed with fmn; mutant
    5. Domains for 3hgs:
      1. 1567712Domain d3hgsa_: 3hgs A: [177557]
        automated match to d1q45a_
        complexed with fmn, phb
      2. 1567713Domain d3hgsb_: 3hgs B: [177558]
        automated match to d1q45a_
        complexed with fmn, phb
  12. 1567718Thale cress (Arabidopsis thaliana) [TaxId:3702] [187180] (2 PDB entries)
    1. Domains for 2q3o:
      1. 1567719Domain d2q3oa_: 2q3o A: [139796]
        automated match to d1q45a_
        complexed with fmn
      2. 1567720Domain d2q3ob_: 2q3o B: [139797]
        automated match to d1q45a_
        complexed with fmn
    2. Domain for 2q3r:
  13. 1567722Thermus thermophilus [TaxId:274] [254915] (1 PDB entry)
  14. 1567727Trypanosoma cruzi [TaxId:5693] [187324] (7 PDB entries)
    1. Domains for 2djl:
      1. 1567730Domain d2djla_: 2djl A: [163640]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
      2. 1567731Domain d2djlb_: 2djl B: [163641]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
    2. Domains for 2djx:
      1. 1567734Domain d2djxa_: 2djx A: [163642]
        automated match to d2b4ga1
        complexed with fmn, nco
      2. 1567735Domain d2djxb_: 2djx B: [163643]
        automated match to d2b4ga1
        complexed with fmn, nco
    3. Domains for 2e68:
      1. 1567732Domain d2e68a_: 2e68 A: [163844]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
      2. 1567733Domain d2e68b_: 2e68 B: [163845]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
    4. Domains for 2e6a:
      1. 1567736Domain d2e6aa_: 2e6a A: [163850]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
      2. 1567737Domain d2e6ab_: 2e6a B: [163851]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
    5. Domains for 2e6d:
      1. 1567738Domain d2e6da_: 2e6d A: [163860]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
      2. 1567739Domain d2e6db_: 2e6d B: [163861]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
    6. Domains for 2e6f:
      1. 1567728Domain d2e6fa_: 2e6f A: [163866]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
      2. 1567729Domain d2e6fb_: 2e6f B: [163867]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
    7. Domains for 3c3n:
      1. 1567740Domain d3c3na_: 3c3n A: [173021]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      2. 1567741Domain d3c3nb_: 3c3n B: [173022]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      3. 1567742Domain d3c3nc_: 3c3n C: [173023]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      4. 1567743Domain d3c3nd_: 3c3n D: [173024]
        automated match to d2b4ga1
        complexed with fmn, gol, so4

More info for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases

Timeline for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases: