Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)
  6. Protein automated matches [190228] (20 species)
    not a true protein

Species:

  1. Geobacillus kaustophilus [TaxId:235909] [257133] (2 PDB entries)
    1. Domains for 4nae:
      1. Domain d4naea_: 4nae A: [257134]
        automated match to d3vzxb_
        complexed with 1gp, pe4
      2. Domain d4naeb_: 4nae B: [257135]
        automated match to d3vzya_
        complexed with 1gp, pe4
    2. Domains for 4naf:
      1. Domain d4nafa_: 4naf A: [257136]
        automated match to d3vzya_
      2. Domain d4nafb_: 4naf B: [257137]
        automated match to d1viza_
  2. Human (Homo sapiens) [TaxId:9606] [187000] (8 PDB entries)
    1. Domain for 2bxv:
    2. Domain for 2wv8:
    3. Domain for 3fj6:
    4. Domain for 3fjl:
    5. Domain for 3g0u:
    6. Domain for 3g0x:
    7. Domain for 3zwt:
    8. Domain for 4oqv:
  3. Kluyveromyces marxianus [TaxId:4911] [311442] (2 PDB entries)
    1. Domains for 4tmb:
      1. Domain d4tmba_: 4tmb A: [309655]
        automated match to d3tx9a_
        complexed with fmn
      2. Domain d4tmbb_: 4tmb B: [309656]
        automated match to d3tx9a_
        complexed with fmn
      3. Domain d4tmbc_: 4tmb C: [309657]
        automated match to d3tx9a_
        complexed with fmn
      4. Domain d4tmbd_: 4tmb D: [309658]
        automated match to d3tx9a_
        complexed with fmn
    2. Domains for 4tmc:
      1. Domain d4tmca_: 4tmc A: [309659]
        automated match to d3tx9a_
        complexed with fmn, hba
      2. Domain d4tmcb_: 4tmc B: [309660]
        automated match to d3tx9a_
        complexed with fmn, hba
      3. Domain d4tmcc_: 4tmc C: [309661]
        automated match to d3tx9a_
        complexed with fmn, hba
      4. Domain d4tmcd_: 4tmc D: [309662]
        automated match to d3tx9a_
        complexed with fmn, hba
  4. Lactococcus lactis [TaxId:1358] [186992] (3 PDB entries)
    1. Domains for 2bsl:
      1. Domain d2bsla_: 2bsl A: [129095]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
      2. Domain d2bslb_: 2bsl B: [129096]
        automated match to d1dora_
        complexed with act, dhb, fmn, gol, mg
    2. Domains for 2bx7:
      1. Domain d2bx7a_: 2bx7 A: [129395]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
      2. Domain d2bx7b_: 2bx7 B: [129396]
        automated match to d1dora_
        complexed with 34d, act, fmn, gol, mg
    3. Domains for 5ksw:
      1. Domain d5kswa_: 5ksw A: [320573]
        Other proteins in same PDB: d5kswb1, d5kswb2, d5kswd1, d5kswd2
        automated match to d1ep3a_
        complexed with cl, edo, fad, fes, fmn; mutant
      2. Domain d5kswc_: 5ksw C: [320925]
        Other proteins in same PDB: d5kswb1, d5kswb2, d5kswd1, d5kswd2
        automated match to d1ep3a_
        complexed with cl, edo, fad, fes, fmn; mutant
  5. Lactococcus lactis [TaxId:1360] [338684] (1 PDB entry)
  6. Leishmania braziliensis [TaxId:5660] [272759] (1 PDB entry)
  7. Leishmania donovani [TaxId:5661] [188354] (1 PDB entry)
  8. Leishmania major [TaxId:347515] [255968] (3 PDB entries)
    1. Domains for 3mhu:
      1. Domain d3mhua1: 3mhu A:1-312 [247707]
        Other proteins in same PDB: d3mhua2, d3mhub2
        automated match to d3c61a_
        complexed with ejz, fmn, gol, so4
      2. Domain d3mhub1: 3mhu B:1-312 [247708]
        Other proteins in same PDB: d3mhua2, d3mhub2
        automated match to d3c61a_
        complexed with ejz, fmn, gol, so4
    2. Domains for 3tq0:
      1. Domain d3tq0a1: 3tq0 A:1-312 [249976]
        Other proteins in same PDB: d3tq0a2, d3tq0b2
        automated match to d3c61a_
        complexed with fmn, fum, gol, ni, so4
      2. Domain d3tq0b1: 3tq0 B:1-312 [249977]
        Other proteins in same PDB: d3tq0a2, d3tq0b2
        automated match to d3c61a_
        complexed with fmn, fum, gol, ni, so4
    3. Domains for 3tro:
      1. Domain d3troa1: 3tro A:1-312 [249994]
        Other proteins in same PDB: d3troa2, d3trob2
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
      2. Domain d3trob1: 3tro B:1-312 [249995]
        Other proteins in same PDB: d3troa2, d3trob2
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
  9. Leishmania major [TaxId:5664] [255853] (9 PDB entries)
    1. Domains for 3gye:
      1. Domain d3gyea_: 3gye A: [246388]
        automated match to d3c61a_
        complexed with fmn, gol
      2. Domain d3gyeb_: 3gye B: [246389]
        automated match to d3c61a_
        complexed with fmn, gol
    2. Domains for 3gz3:
      1. Domain d3gz3a_: 3gz3 A: [246394]
        automated match to d3c61a_
        complexed with fmn, gol, oro
      2. Domain d3gz3b_: 3gz3 B: [246395]
        automated match to d3c61a_
        complexed with fmn, gol, oro
    3. Domains for 3mjy:
      1. Domain d3mjya1: 3mjy A:1-312 [247733]
        Other proteins in same PDB: d3mjya2, d3mjyb2
        automated match to d3c61a_
        complexed with fmn, gol, ijz, so4
      2. Domain d3mjyb1: 3mjy B:1-312 [247734]
        Other proteins in same PDB: d3mjya2, d3mjyb2
        automated match to d3c61a_
        complexed with fmn, gol, ijz, so4
    4. Domains for 3tjx:
      1. Domain d3tjxa1: 3tjx A:1-312 [249919]
        Other proteins in same PDB: d3tjxa2, d3tjxb2
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
      2. Domain d3tjxb1: 3tjx B:1-312 [249920]
        Other proteins in same PDB: d3tjxa2, d3tjxb2
        automated match to d3c61a_
        complexed with fmn, gol, so4; mutant
    5. Domains for 4ef8:
      1. Domain d4ef8a1: 4ef8 A:1-312 [251739]
        Other proteins in same PDB: d4ef8a2, d4ef8b2
        automated match to d3c61a_
        complexed with 0fi, fmn, gol, so4
      2. Domain d4ef8b1: 4ef8 B:1-312 [251740]
        Other proteins in same PDB: d4ef8a2, d4ef8b2
        automated match to d3c61a_
        complexed with 0fi, fmn, gol, so4
    6. Domains for 4ef9:
      1. Domain d4ef9a1: 4ef9 A:1-312 [251741]
        Other proteins in same PDB: d4ef9a2, d4ef9b2
        automated match to d3c61a_
        complexed with 4nf, fmn, gol, so4
      2. Domain d4ef9b1: 4ef9 B:1-312 [251742]
        Other proteins in same PDB: d4ef9a2, d4ef9b2
        automated match to d3c61a_
        complexed with 4nf, fmn, gol, so4
    7. Domains for 6dgs:
      1. Domain d6dgsa1: 6dgs A:1-313 [369317]
        Other proteins in same PDB: d6dgsa2, d6dgsb2
        automated match to d2djxa_
        complexed with fmn, gol, so4; mutant
      2. Domain d6dgsb1: 6dgs B:1-313 [369453]
        Other proteins in same PDB: d6dgsa2, d6dgsb2
        automated match to d2djxa_
        complexed with fmn, gol, so4; mutant
    8. Domains for 6dwg:
      1. Domain d6dwga1: 6dwg A:1-312 [369711]
        Other proteins in same PDB: d6dwga2, d6dwgb2
        automated match to d2djxa_
        complexed with fmn, gol, ni, so4; mutant
      2. Domain d6dwgb1: 6dwg B:1-312 [369758]
        Other proteins in same PDB: d6dwga2, d6dwgb2
        automated match to d2djxa_
        complexed with fmn, gol, ni, so4; mutant
    9. Domains for 6ebs:
      1. Domain d6ebsa1: 6ebs A:1-312 [373086]
        Other proteins in same PDB: d6ebsa2, d6ebsb2
        automated match to d2djxa_
        complexed with fmn, gol, ni, oro, so4; mutant
      2. Domain d6ebsb1: 6ebs B:1-312 [373085]
        Other proteins in same PDB: d6ebsa2, d6ebsb2
        automated match to d2djxa_
        complexed with fmn, gol, ni, oro, so4; mutant
  10. Malaria parasite (Plasmodium falciparum) [TaxId:5833] [256645] (7 PDB entries)
    1. Domains for 4cq8:
      1. Domain d4cq8a1: 4cq8 A:158-567 [256646]
        Other proteins in same PDB: d4cq8a2, d4cq8b2
        automated match to d1tv5a1
        complexed with fmn, jbw, oro
      2. Domain d4cq8b1: 4cq8 B:158-567 [256647]
        Other proteins in same PDB: d4cq8a2, d4cq8b2
        automated match to d1tv5a1
        complexed with fmn, jbw, oro
    2. Domains for 4cq9:
      1. Domain d4cq9a_: 4cq9 A: [266032]
        automated match to d4cq8a_
        complexed with fmn, oro, xbl
      2. Domain d4cq9b_: 4cq9 B: [266033]
        automated match to d4cq8a_
        complexed with fmn, oro, xbl
    3. Domains for 4cqa:
      1. Domain d4cqaa_: 4cqa A: [266034]
        automated match to d4cq8a_
        complexed with fmn, id6, oro
      2. Domain d4cqab_: 4cqa B: [266035]
        automated match to d4cq8a_
        complexed with fmn, id6, oro
    4. Domain for 4orm:
    5. Domain for 4rx0:
    6. Domains for 5boo:
      1. Domain d5booa_: 5boo A: [275348]
        automated match to d4cq8a_
        complexed with d65, fmn, oro
      2. Domain d5boob_: 5boo B: [275349]
        automated match to d4cq8a_
        complexed with d65, fmn, oro
    7. Domain for 5del:
  11. Nicotiana benthamiana [TaxId:4100] [361819] (2 PDB entries)
    1. Domains for 5zbm:
      1. Domain d5zbma_: 5zbm A: [361856]
        automated match to d1gyla_
        complexed with fmn
      2. Domain d5zbmb_: 5zbm B: [361880]
        automated match to d1gyla_
        complexed with fmn
    2. Domains for 5zbn:
      1. Domain d5zbna_: 5zbn A: [361859]
        automated match to d1gyla_
        complexed with po4
      2. Domain d5zbnb_: 5zbn B: [361860]
        automated match to d1gyla_
        complexed with po4
      3. Domain d5zbnc_: 5zbn C: [361820]
        automated match to d1gyla_
        complexed with po4
  12. Norway rat (Rattus norvegicus) [TaxId:10116] [195883] (2 PDB entries)
    1. Domains for 3sgz:
      1. Domain d3sgza_: 3sgz A: [200657]
        automated match to d3sgzc_
        complexed with fmn, ho6
      2. Domain d3sgzb_: 3sgz B: [200658]
        automated match to d3sgzc_
        complexed with fmn, ho6
      3. Domain d3sgzc_: 3sgz C: [195884]
        automated match to d1tb3a1
        complexed with fmn, ho6
    2. Domain for 4ori:
  13. Plasmodium falciparum [TaxId:36329] [189697] (9 PDB entries)
    1. Domain for 3i65:
    2. Domain for 3i68:
    3. Domain for 3i6r:
    4. Domain for 3o8a:
    5. Domain for 3sfk:
    6. Domains for 6vty:
      1. Domain d6vtya1: 6vty A:158-566 [384471]
        Other proteins in same PDB: d6vtya2
        automated match to d1tv5a1
        complexed with fmn, oro, rla
      2. Domain d6vtyb_: 6vty B: [384523]
        Other proteins in same PDB: d6vtya2
        automated match to d1tv5a1
        complexed with fmn, oro, rla
      3. Domain d6vtyc_: 6vty C: [384463]
        Other proteins in same PDB: d6vtya2
        automated match to d1tv5a1
        complexed with fmn, oro, rla
      4. Domain d6vtyd_: 6vty D: [384553]
        Other proteins in same PDB: d6vtya2
        automated match to d1tv5a1
        complexed with fmn, oro, rla
    7. Domain for 7kyk:
    8. Domain for 7kyy:
    9. Domain for 7l0k:
  14. Pseudomonas putida [TaxId:303] [225091] (5 PDB entries)
    1. Domain for 2a7n:
    2. Domain for 2a7p:
    3. Domain for 2a85:
    4. Domain for 3giy:
    5. Domains for 6bfg:
      1. Domain d6bfga_: 6bfg A: [355977]
        automated match to d1p4ca_
        complexed with cit, edo, fmn, gol, lmt, na, peg, po4, so4
      2. Domain d6bfgb_: 6bfg B: [355976]
        automated match to d1p4ca_
        complexed with cit, edo, fmn, gol, lmt, na, peg, po4, so4
  15. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [347828] (2 PDB entries)
    1. Domains for 5v4p:
      1. Domain d5v4pa_: 5v4p A: [347912]
        automated match to d1bwka_
        complexed with fmn, hba, na, toe
      2. Domain d5v4pb_: 5v4p B: [347860]
        automated match to d1bwka_
        complexed with fmn, hba, na, toe
    2. Domains for 5v4v:
      1. Domain d5v4va_: 5v4v A: [347829]
        automated match to d1bwka_
        complexed with fmn, gol, nca
      2. Domain d5v4vb_: 5v4v B: [347842]
        automated match to d1bwka_
        complexed with fmn, gol, nca
  16. Solanum lycopersicum [TaxId:4081] [187823] (5 PDB entries)
    1. Domains for 2hs6:
      1. Domain d2hs6a_: 2hs6 A: [165230]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
      2. Domain d2hs6b_: 2hs6 B: [165231]
        automated match to d1q45a_
        complexed with fmn, mes; mutant
    2. Domains for 2hs8:
      1. Domain d2hs8a_: 2hs8 A: [165232]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. Domain d2hs8b_: 2hs8 B: [165233]
        automated match to d1q45a_
        complexed with fmn; mutant
    3. Domains for 2hsa:
      1. Domain d2hsaa_: 2hsa A: [165234]
        automated match to d1q45a_
        complexed with cl, fmn, so4
      2. Domain d2hsab_: 2hsa B: [165235]
        automated match to d1q45a_
        complexed with cl, fmn, so4
    4. Domains for 3hgo:
      1. Domain d3hgoa_: 3hgo A: [177552]
        automated match to d1q45a_
        complexed with fmn; mutant
      2. Domain d3hgob_: 3hgo B: [177553]
        automated match to d1q45a_
        complexed with fmn; mutant
    5. Domains for 3hgs:
      1. Domain d3hgsa_: 3hgs A: [177557]
        automated match to d1q45a_
        complexed with fmn, phb
      2. Domain d3hgsb_: 3hgs B: [177558]
        automated match to d1q45a_
        complexed with fmn, phb
  17. Thale cress (Arabidopsis thaliana) [TaxId:3702] [187180] (2 PDB entries)
    1. Domains for 2q3o:
      1. Domain d2q3oa_: 2q3o A: [139796]
        automated match to d1q45a_
        complexed with fmn
      2. Domain d2q3ob_: 2q3o B: [139797]
        automated match to d1q45a_
        complexed with fmn
    2. Domain for 2q3r:
  18. Thermus thermophilus [TaxId:274] [254915] (1 PDB entry)
  19. Trypanosoma cruzi [TaxId:353153] [324150] (2 PDB entries)
    1. Domains for 5e93:
      1. Domain d5e93a_: 5e93 A: [324181]
        automated match to d2djxa_
        complexed with 5ll, cac, edo, fmn, gol, nco, peg
      2. Domain d5e93b_: 5e93 B: [324169]
        automated match to d2djxa_
        complexed with 5ll, cac, edo, fmn, gol, nco, peg
    2. Domains for 5ea9:
      1. Domain d5ea9a_: 5ea9 A: [324151]
        automated match to d2djxa_
        complexed with 5lm, edo, fmn, gol, nco
      2. Domain d5ea9b_: 5ea9 B: [324155]
        automated match to d2djxa_
        complexed with 5lm, edo, fmn, gol, nco
  20. Trypanosoma cruzi [TaxId:5693] [187324] (7 PDB entries)
    1. Domains for 2djl:
      1. Domain d2djla_: 2djl A: [163640]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
      2. Domain d2djlb_: 2djl B: [163641]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, sin
    2. Domains for 2djx:
      1. Domain d2djxa_: 2djx A: [163642]
        automated match to d2b4ga1
        complexed with fmn, nco
      2. Domain d2djxb_: 2djx B: [163643]
        automated match to d2b4ga1
        complexed with fmn, nco
    3. Domains for 2e68:
      1. Domain d2e68a_: 2e68 A: [163844]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
      2. Domain d2e68b_: 2e68 B: [163845]
        automated match to d2b4ga1
        complexed with dor, fmn, gol, nco
    4. Domains for 2e6a:
      1. Domain d2e6aa_: 2e6a A: [163850]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
      2. Domain d2e6ab_: 2e6a B: [163851]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oro
    5. Domains for 2e6d:
      1. Domain d2e6da_: 2e6d A: [163860]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
      2. Domain d2e6db_: 2e6d B: [163861]
        automated match to d2b4ga1
        complexed with fmn, fum, gol, nco
    6. Domains for 2e6f:
      1. Domain d2e6fa_: 2e6f A: [163866]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
      2. Domain d2e6fb_: 2e6f B: [163867]
        automated match to d2b4ga1
        complexed with fmn, gol, nco, oxc
    7. Domains for 3c3n:
      1. Domain d3c3na_: 3c3n A: [173021]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      2. Domain d3c3nb_: 3c3n B: [173022]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      3. Domain d3c3nc_: 3c3n C: [173023]
        automated match to d2b4ga1
        complexed with fmn, gol, so4
      4. Domain d3c3nd_: 3c3n D: [173024]
        automated match to d2b4ga1
        complexed with fmn, gol, so4

More info for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases

Timeline for Protein automated matches from c.1.4.1: FMN-linked oxidoreductases: