SCOPe 2.04: Domain d1vcga_: 1vcg A:

Lineage for d1vcga_ (1vcg A:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families)

5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)

6. Protein automated matches [190228] (14 species)
   not a true protein

7. Species Thermus thermophilus [TaxId:274] [254915] (1 PDB entry)

8. Domain d1vcga_: 1vcg A: [119976]
   automated match to d3dh7a1
   complexed with fmn

Details for d1vcga_

PDB Entry: 1vcg, 3.02 Å

PDB Description: Crystal Structure of IPP isomerase at P43212

PDB Compounds: (A:) Isopentenyl-diphosphate delta-isomerase

SCOPe Domain Sequences for d1vcga_:

Sequence, based on SEQRES records:

>d1vcga_ c.1.4.1 (A:) automated matches {Thermus thermophilus [TaxId: 274]}
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamtg
geengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaq
lrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvke
vghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarail
evrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyle
elrtalfaigarnpkeargrverv

Sequence, based on observed residues (ATOM records):

>d1vcga_ c.1.4.1 (A:) automated matches {Thermus thermophilus [TaxId: 274]}
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpvrkvapkallianlglaqlrrygrddllrlv
emleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaalal
rdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlphlplva
sggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfaigarn
pkeargrverv

Timeline for d1vcga_:

• d1vcga_ first appeared in SCOP 1.73, called d1vcga1
  
• d1vcga_ was called d1vcga1 in SCOPe 2.03
  
• d1vcga_ appears in SCOPe 2.05
  
• d1vcga_ appears in the current release, SCOPe 2.08