Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1143364Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1147695Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 1147696Family c.1.10.1: Class I aldolase [51570] (13 proteins)
    the catalytic lysine forms schiff-base intermediate with substrate
    possible link between the aldolase superfamily and the phosphate-binding beta/alpha barrels
  6. 1148206Protein automated matches [190095] (15 species)
    not a true protein

Species:

  1. 1148207Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [189130] (1 PDB entry)
  2. 1148212Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188824] (1 PDB entry)
  3. 1148215Escherichia coli [TaxId:469008] [189446] (3 PDB entries)
    1. Domain for 2wnz:
    2. Domains for 2wo5:
      1. 1148221Domain d2wo5a_: 2wo5 A: [169505]
        automated match to d1hl2a_
      2. 1148222Domain d2wo5b_: 2wo5 B: [169506]
        automated match to d1hl2a_
      3. 1148223Domain d2wo5c_: 2wo5 C: [169507]
        automated match to d1hl2a_
      4. 1148224Domain d2wo5d_: 2wo5 D: [169508]
        automated match to d1hl2a_
    3. Domains for 2ygy:
      1. 1148217Domain d2ygya_: 2ygy A: [195649]
        automated match to d2wo5a_
        complexed with 1pe, cl
      2. 1148218Domain d2ygyb_: 2ygy B: [195648]
        automated match to d2wo5a_
        complexed with 1pe, cl
      3. 1148219Domain d2ygyc_: 2ygy C: [195647]
        automated match to d2wo5a_
        complexed with 1pe, cl
      4. 1148220Domain d2ygyd_: 2ygy D: [195650]
        automated match to d2wo5a_
        complexed with 1pe, cl
  4. 1148225Escherichia coli [TaxId:562] [189174] (4 PDB entries)
    1. Domains for 2wkj:
      1. 1148226Domain d2wkja_: 2wkj A: [169407]
        automated match to d1hl2a_
        complexed with 1pe, pyr; mutant
      2. 1148227Domain d2wkjb_: 2wkj B: [169408]
        automated match to d1hl2a_
        complexed with 1pe, pyr; mutant
      3. 1148228Domain d2wkjc_: 2wkj C: [169409]
        automated match to d1hl2a_
        complexed with 1pe, pyr; mutant
      4. 1148229Domain d2wkjd_: 2wkj D: [169410]
        automated match to d1hl2a_
        complexed with 1pe, pyr; mutant
    2. Domains for 2wnn:
      1. 1148230Domain d2wnna_: 2wnn A: [169477]
        automated match to d1hl2a_
        complexed with 1pe, na
      2. 1148231Domain d2wnnb_: 2wnn B: [169478]
        automated match to d1hl2a_
        complexed with 1pe, na
      3. 1148232Domain d2wnnc_: 2wnn C: [169479]
        automated match to d1hl2a_
        complexed with 1pe, na
      4. 1148233Domain d2wnnd_: 2wnn D: [169480]
        automated match to d1hl2a_
        complexed with 1pe, na
    3. Domains for 2wnq:
      1. 1148234Domain d2wnqa_: 2wnq A: [169482]
        automated match to d1hl2a_
        complexed with cl; mutant
      2. 1148235Domain d2wnqb_: 2wnq B: [169483]
        automated match to d1hl2a_
        complexed with cl; mutant
      3. 1148236Domain d2wnqc_: 2wnq C: [169484]
        automated match to d1hl2a_
        complexed with cl; mutant
      4. 1148237Domain d2wnqd_: 2wnq D: [169485]
        automated match to d1hl2a_
        complexed with cl; mutant
    4. Domain for 2wpb:
  5. 1148239Mouse (Mus musculus) [TaxId:10090] [187041] (2 PDB entries)
    1. Domain for 2cwn:
    2. Domains for 2e1d:
      1. 1148240Domain d2e1da_: 2e1d A: [146627]
        automated match to d1f05a_
        complexed with so3
      2. 1148241Domain d2e1db_: 2e1d B: [146628]
        automated match to d1f05a_
        complexed with so3
  6. 1148243Mycobacterium tuberculosis [TaxId:1773] [189568] (1 PDB entry)
  7. 1148250Oleispira antarctica [TaxId:188908] [189374] (1 PDB entry)
  8. 1148252Pseudomonas aeruginosa [TaxId:208964] [189421] (1 PDB entry)
  9. 1148255Pyrobaculum aerophilum [TaxId:13773] [187314] (1 PDB entry)
  10. 1148257Salmonella enterica [TaxId:99287] [189300] (1 PDB entry)
  11. 1148264Salmonella typhimurium [TaxId:90371] [189452] (2 PDB entries)
    1. Domains for 3oex:
      1. 1148265Domain d3oexa_: 3oex A: [182970]
        automated match to d1gqna_
        complexed with cl
      2. 1148266Domain d3oexb_: 3oex B: [182971]
        automated match to d1gqna_
        complexed with cl
      3. 1148267Domain d3oexc_: 3oex C: [182972]
        automated match to d1gqna_
        complexed with cl
      4. 1148268Domain d3oexd_: 3oex D: [182973]
        automated match to d1gqna_
        complexed with cl
    2. Domain for 4gfs:
  12. 1148270Sulfolobus solfataricus [TaxId:2287] [195677] (1 PDB entry)
  13. 1148272Thermoplasma acidophilum [TaxId:273075] [189712] (3 PDB entries)
    1. Domains for 3s0c:
      1. 1148278Domain d3s0ca_: 3s0c A: [185239]
        automated match to d1vpxe_
        complexed with gol
      2. 1148279Domain d3s0cd_: 3s0c D: [185240]
        automated match to d1vpxe_
        complexed with gol
      3. 1148280Domain d3s0ce_: 3s0c E: [185241]
        automated match to d1vpxe_
        complexed with gol
    2. Domain for 3s1u:
    3. Domains for 3s1w:
      1. 1148273Domain d3s1wa_: 3s1w A: [185247]
        automated match to d1vpxe_
        complexed with flc, gol
      2. 1148274Domain d3s1wb_: 3s1w B: [185248]
        automated match to d1vpxe_
        complexed with flc, gol
      3. 1148275Domain d3s1wc_: 3s1w C: [185249]
        automated match to d1vpxe_
        complexed with flc, gol
      4. 1148276Domain d3s1wd_: 3s1w D: [185250]
        automated match to d1vpxe_
        complexed with flc, gol
      5. 1148277Domain d3s1we_: 3s1w E: [185251]
        automated match to d1vpxe_
        complexed with flc, gol
  14. 1148282Thermoproteus tenax [TaxId:2271] [186816] (1 PDB entry)
  15. 1148292Thermotoga maritima [TaxId:2336] [186818] (3 PDB entries)
    1. Domains for 1wa3:
      1. 1148303Domain d1wa3a_: 1wa3 A: [120802]
        automated match to d1vlwb_
        complexed with pyr, so4
      2. 1148304Domain d1wa3b_: 1wa3 B: [120803]
        automated match to d1vlwb_
        complexed with pyr, so4
      3. 1148305Domain d1wa3c_: 1wa3 C: [120804]
        automated match to d1vlwb_
        complexed with pyr, so4
      4. 1148306Domain d1wa3d_: 1wa3 D: [120805]
        automated match to d1vlwb_
        complexed with pyr, so4
      5. 1148307Domain d1wa3e_: 1wa3 E: [120806]
        automated match to d1vlwb_
        complexed with pyr, so4
      6. 1148308Domain d1wa3f_: 1wa3 F: [120807]
        automated match to d1vlwb_
        complexed with pyr, so4
    2. Domains for 3pb0:
      1. 1148299Domain d3pb0a_: 3pb0 A: [183617]
        automated match to d1o5ka_
        complexed with so4
      2. 1148300Domain d3pb0b_: 3pb0 B: [183618]
        automated match to d1o5ka_
        complexed with so4
      3. 1148301Domain d3pb0c_: 3pb0 C: [183619]
        automated match to d1o5ka_
        complexed with so4
      4. 1148302Domain d3pb0d_: 3pb0 D: [183620]
        automated match to d1o5ka_
        complexed with so4
    3. Domains for 3pb2:
      1. 1148293Domain d3pb2a_: 3pb2 A: [183622]
        automated match to d1o5ka_
        complexed with gol
      2. 1148294Domain d3pb2b_: 3pb2 B: [183623]
        automated match to d1o5ka_
        complexed with gol
      3. 1148295Domain d3pb2c_: 3pb2 C: [183624]
        automated match to d1o5ka_
        complexed with gol
      4. 1148296Domain d3pb2d_: 3pb2 D: [183625]
        automated match to d1o5ka_
        complexed with gol
      5. 1148297Domain d3pb2e_: 3pb2 E: [183626]
        automated match to d1o5ka_
        complexed with gol
      6. 1148298Domain d3pb2f_: 3pb2 F: [183627]
        automated match to d1o5ka_
        complexed with gol

More info for Protein automated matches from c.1.10.1: Class I aldolase

Timeline for Protein automated matches from c.1.10.1: Class I aldolase: