PDB entry 3pb2

View 3pb2 on RCSB PDB site
Description: Characterisation of the first monomeric dihydrodipicolinate synthase variant reveals evolutionary insights
Class: lyase
Keywords: TIM-Barrel, LYASE
Deposited on 2010-10-20, released 2011-11-23
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-11-23, with a file datestamp of 2011-11-18.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.171
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1K9 (6-299)
      • expression tag (0-5)
      • engineered mutation (238)
      • engineered mutation (242)
    Domains in SCOPe 2.02: d3pb2a_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1K9 (6-299)
      • expression tag (2-5)
      • engineered mutation (238)
      • engineered mutation (242)
    Domains in SCOPe 2.02: d3pb2b_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1K9 (6-299)
      • expression tag (3-5)
      • engineered mutation (238)
      • engineered mutation (242)
    Domains in SCOPe 2.02: d3pb2c_
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1K9 (6-299)
      • expression tag (2-5)
      • engineered mutation (238)
      • engineered mutation (242)
    Domains in SCOPe 2.02: d3pb2d_
  • Chain 'E':
    Compound: Dihydrodipicolinate synthase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1K9 (6-299)
      • expression tag (4-5)
      • engineered mutation (238)
      • engineered mutation (242)
    Domains in SCOPe 2.02: d3pb2e_
  • Chain 'F':
    Compound: Dihydrodipicolinate synthase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9X1K9 (6-299)
      • expression tag (5)
      • engineered mutation (238)
      • engineered mutation (242)
    Domains in SCOPe 2.02: d3pb2f_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pb2A (A:)
gidpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnede
reklvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqegl
yqhykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtv
sltkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksae
vhaklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pb2B (B:)
gidpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnede
reklvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqegl
yqhykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtv
sltkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksae
vhaklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

    Sequence, based on observed residues (ATOM records): (download) 
    >3pb2B (B:)
dpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnedere
klvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqeglyq
hykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtvsl
tkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksaevh
aklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pb2C (C:)
gidpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnede
reklvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqegl
yqhykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtv
sltkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksae
vhaklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

    Sequence, based on observed residues (ATOM records): (download) 
    >3pb2C (C:)
pftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnederek
lvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqeglyqh
ykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtvslt
kqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksaevha
klrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3pb2D (D:)
gidpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnede
reklvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqegl
yqhykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtv
sltkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksae
vhaklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

    Sequence, based on observed residues (ATOM records): (download) 
    >3pb2D (D:)
dpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnedere
klvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqeglyq
hykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtvsl
tkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksaevh
aklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3pb2E (E:)
gidpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnede
reklvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqegl
yqhykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtv
sltkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksae
vhaklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

    Sequence, based on observed residues (ATOM records): (download) 
    >3pb2E (E:)
ftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnederekl
vsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqeglyqhy
kyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtvsltk
qarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksaevhak
lrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3pb2F (F:)
gidpftmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnede
reklvsrtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqegl
yqhykyisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtv
sltkqarsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksae
vhaklrplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll

    Sequence, based on observed residues (ATOM records): (download) 
    >3pb2F (F:)
tmfrgvgtaivtpfkngeldlesyerlvryqlengvnalivlgttgesptvnedereklv
srtleivdgkipvivgagtnstektlklvkqaeklgangvlvvtpyynkptqeglyqhyk
yisertdlgivvynvpgrtgvnvlpetaariaadlknvvgikeanpdidqidrtvsltkq
arsdfmvwsgnddrtfyllcaggdgvisvvsnvapkqmvelcaeyfsgnleksaevhakl
rplmkalfvetnpipvkaalnlmgfienelrlplvpasektvellrnvlkesgll