PDB entry 2yda

View 2yda on RCSB PDB site
Description: Sulfolobus sulfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F, A198F variant
Class: lyase
Keywords: lyase, tim barrel, biocatalysis
Deposited on 2011-03-18, released 2012-03-28
The last revision prior to the SCOPe 2.02 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: 0.174
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-keto-3-deoxy gluconate aldolase
    Species: Sulfolobus solfataricus [TaxId:2287]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O54288
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (197)
  • Chain 'B':
    Compound: 2-keto-3-deoxy gluconate aldolase
    Species: Sulfolobus solfataricus [TaxId:2287]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O54288 (Start-293)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (197)
    Domains in SCOPe 2.02: d2ydab_
  • Heterogens: GOL, EPE, IPA, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ydaB (B:)
mpeiitpiitpftkdnridkeklkihaenlirkgidklfvngttglgpslspeeklenlk
avydvtnkiifqvgglnlddairlaklskdfdivgiasyapyfyprmsekhlvkyfktlc
evsphpvylfnyptatgkdidakvakeigcftgvkdtieniihtldykrlnpnmlvysgs
dmliatvastgldgnvafgsnylpevtvtikklamerkidealklqflhdevieasrifg
slssnyvltkyfqgydlgyprppifplddeeerqlikkvegiraklvelkilke

    Sequence, based on observed residues (ATOM records): (download) 
    >2ydaB (B:)
peiitpiitpftkdnridkeklkihaenlirkgidklfvngttglgpslspeeklenlka
vydvtnkiifqvgglnlddairlaklskdfdivgiasyapyfyprmsekhlvkyfktlce
vsphpvylfnyptatgkdidakvakeigcftgvkdtieniihtldykrlnpnmlvysgsd
mliatvastgldgnvafgsnylpevtvtikklamerkidealklqflhdevieasrifgs
lssnyvltkyfqgydlgyprppifplddeeerqlikkvegiraklvelkilke