SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1988413Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 1988414Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. 1990501Family a.25.1.6: PMT1231-like [158402] (2 protein domains)
    PfamB PB016165
    automatically mapped to Pfam PF11266
  6. 1990512Protein automated matches [261918] (4 species)
    not a true protein

Species:

  1. 1990513Synechococcus elongatus [TaxId:1140] [261919] (5 PDB entries)
    1. Domain for 4quw:
    2. Domains for 4rc5:
      1. 1990518Domain d4rc5a_: 4rc5 A: [261941]
        automated match to d2oc5a1
        complexed with fe2, pl3
      2. 1990519Domain d4rc5b_: 4rc5 B: [261942]
        automated match to d4kvqa_
        complexed with fe2, pl3
    3. Domains for 4rc6:
      1. 1990521Domain d4rc6a_: 4rc6 A: [261937]
        automated match to d4kvqa_
        complexed with fe2; mutant
      2. 1990522Domain d4rc6b_: 4rc6 B: [261939]
        automated match to d4kvra_
        complexed with fe2; mutant
    4. Domains for 4rc7:
      1. 1990516Domain d4rc7a_: 4rc7 A: [261936]
        automated match to d4kvqa_
        complexed with fe2, pl3; mutant
      2. 1990517Domain d4rc7b_: 4rc7 B: [261938]
        automated match to d2oc5a1
        complexed with fe2, pl3; mutant
    5. Domains for 4rc8:
      1. 1990514Domain d4rc8a_: 4rc8 A: [261940]
        automated match to d4kvqa_
        complexed with fe, ste
      2. 1990515Domain d4rc8b_: 4rc8 B: [261943]
        automated match to d4kvqa_
        complexed with fe, ste
  2. 2269021Synechocystis sp. [TaxId:1111708] [312327] (1 PDB entry)
  3. 2278920Oscillatoria sp. [TaxId:1159] [322221] (1 PDB entry)
  4. 2287742Limnothrix sp. [TaxId:1162714] [331043] (1 PDB entry)

More info for Protein automated matches from a.25.1.6: PMT1231-like

Timeline for Protein automated matches from a.25.1.6: PMT1231-like: