SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
Superfamily d.79.2: Tubulin C-terminal domain-like [55307] (2 families)
Family d.79.2.0: automated matches [227141] (1 protein)
not a true family
Protein automated matches [226843] (8 species)
not a true protein

Species:

Bacillus subtilis [TaxId:1423] [225339] (3 PDB entries)
1. Domain for 2vam:
  - Domain d2vama2: 2vam A:209-315 [206283]
    Other proteins in same PDB: d2vama1
    automated match to d1rq2a2
    complexed with so4
2. Domain for 2vxy:
  - Domain d2vxya2: 2vxy A:209-316 [206533]
    Other proteins in same PDB: d2vxya1
    automated match to d1rq2a2
    complexed with cit, k
3. Domains for 4u39:
  1. Domain d4u39a2: 4u39 A:209-314 [270647]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
  2. Domain d4u39b2: 4u39 B:211-314 [270626]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
  3. Domain d4u39c2: 4u39 C:212-314 [270645]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
  4. Domain d4u39d2: 4u39 D:211-314 [270643]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
  5. Domain d4u39e2: 4u39 E:211-313 [270636]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
  6. Domain d4u39f2: 4u39 F:211-314 [270628]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
  7. Domain d4u39g2: 4u39 G:212-314 [270649]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
  8. Domain d4u39i2: 4u39 I:215-313 [270651]
    Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
    automated match to d2vxya2
    complexed with po4
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [259120] (1 PDB entry)
- Domain for 4u3j:
  - Domain d4u3ja2: 4u3j A:247-438 [259121]
    Other proteins in same PDB: d4u3ja1, d4u3jb1
    automated match to d1tuba2
    complexed with gtp, mg
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [224936] (2 PDB entries)
1. Domains for 4ffb:
  1. Domain d4ffba2: 4ffb A:247-439 [221162]
    Other proteins in same PDB: d4ffba1, d4ffbb1
    automated match to d1jffa2
    complexed with gtp, mg
  2. Domain d4ffbb2: 4ffb B:244-432 [221164]
    Other proteins in same PDB: d4ffba1, d4ffbb1
    automated match to d1jffb2
    complexed with gtp, mg
2. Domain for 4u3j:
  - Domain d4u3jb2: 4u3j B:244-430 [259124]
    Other proteins in same PDB: d4u3ja1, d4u3jb1
    automated match to d4ffbb2
    complexed with gtp, mg
Human (Homo sapiens) [TaxId:9606] [224983] (3 PDB entries)
1. Domain for 1z5v:
  - Domain d1z5va2: 1z5v A:247-440 [203302]
    Other proteins in same PDB: d1z5va1
    automated match to d1jffb2
    complexed with gsp, mg
2. Domain for 1z5w:
  - Domain d1z5wa2: 1z5w A:247-440 [241119]
    Other proteins in same PDB: d1z5wa1
    automated match to d3cb2a2
    complexed with gtp, mg
3. Domains for 3cb2:
  1. Domain d3cb2a2: 3cb2 A:247-446 [208845]
    Other proteins in same PDB: d3cb2a1, d3cb2b1
    automated match to d1jffb2
    complexed with gdp
  2. Domain d3cb2b2: 3cb2 B:247-446 [208847]
    Other proteins in same PDB: d3cb2a1, d3cb2b1
    automated match to d1jffb2
    complexed with gdp
Staphylococcus aureus [TaxId:1280] [327472] (9 PDB entries)
1. Domain for 5mn4:
  - Domain d5mn4a2: 5mn4 A:209-315 [327506]
    Other proteins in same PDB: d5mn4a1
    automated match to d4dxda2
    complexed with gdp, mpd
2. Domains for 5mn5:
  1. Domain d5mn5a2: 5mn5 A:209-315 [327473]
    Other proteins in same PDB: d5mn5a1, d5mn5b1
    automated match to d4dxda2
    complexed with gtp
  2. Domain d5mn5b2: 5mn5 B:209-315 [327494]
    Other proteins in same PDB: d5mn5a1, d5mn5b1
    automated match to d4dxda2
    complexed with gtp
3. Domain for 6kvp:
  - Domain d6kvpa2: 6kvp A:209-315 [379043]
    Other proteins in same PDB: d6kvpa1, d6kvpa3
    automated match to d4m8ia2
    complexed with ca, gdp, zi1
4. Domain for 6kvq:
  - Domain d6kvqa2: 6kvq A:209-316 [378970]
    Other proteins in same PDB: d6kvqa1, d6kvqa3
    automated match to d4m8ia2
    complexed with ca, dvx, gdp
5. Domains for 6rvm:
  1. Domain d6rvma2: 6rvm A:209-315 [381171]
    Other proteins in same PDB: d6rvma1, d6rvmb1, d6rvmc1, d6rvmc3, d6rvmd1, d6rvmd3
    automated match to d4m8ia2
    complexed with cl, gol, mg, so4
  2. Domain d6rvmb2: 6rvm B:209-315 [381087]
    Other proteins in same PDB: d6rvma1, d6rvmb1, d6rvmc1, d6rvmc3, d6rvmd1, d6rvmd3
    automated match to d4m8ia2
    complexed with cl, gol, mg, so4
  3. Domain d6rvmc2: 6rvm C:209-316 [381103]
    Other proteins in same PDB: d6rvma1, d6rvmb1, d6rvmc1, d6rvmc3, d6rvmd1, d6rvmd3
    automated match to d4m8ia2
    complexed with cl, gol, mg, so4
  4. Domain d6rvmd2: 6rvm D:209-316 [381066]
    Other proteins in same PDB: d6rvma1, d6rvmb1, d6rvmc1, d6rvmc3, d6rvmd1, d6rvmd3
    automated match to d4m8ia2
    complexed with cl, gol, mg, so4
6. Domain for 6rvn:
  - Domain d6rvna2: 6rvn A:209-315 [381081]
    Other proteins in same PDB: d6rvna1, d6rvna3
    automated match to d4m8ia2
    complexed with ca, gdp
7. Domain for 6rvp:
  - Domain d6rvpa2: 6rvp A:209-315 [381183]
    Other proteins in same PDB: d6rvpa1, d6rvpa3
    automated match to d4m8ia2
    complexed with ca, gdp, mb3
8. Domain for 6rvq:
  - Domain d6rvqa2: 6rvq A:209-315 [381084]
    Other proteins in same PDB: d6rvqa1, d6rvqa3
    automated match to d4m8ia2
    complexed with ca, edo, gdp
9. Domain for 6si9:
  - Domain d6si9a2: 6si9 A:209-315 [381118]
    Other proteins in same PDB: d6si9a1, d6si9a3
    automated match to d4m8ia2
    complexed with ca, edo, gdp
Staphylococcus aureus [TaxId:158878] [267906] (1 PDB entry)
- Domains for 3wgl:
  1. Domain d3wgla2: 3wgl A:207-313 [265644]
    Other proteins in same PDB: d3wgla1, d3wglb1
    automated match to d4m8ia2
    complexed with gdp; mutant
  2. Domain d3wglb2: 3wgl B:207-314 [265646]
    Other proteins in same PDB: d3wgla1, d3wglb1
    automated match to d4m8ia2
    complexed with gdp; mutant
Staphylococcus aureus [TaxId:282458] [334408] (7 PDB entries)
1. Domains for 5h5g:
  1. Domain d5h5ga2: 5h5g A:209-316 [334415]
    Other proteins in same PDB: d5h5ga1, d5h5ga3, d5h5gb1, d5h5gb3
    automated match to d4m8ia2
    complexed with ca, gdp
  2. Domain d5h5gb2: 5h5g B:209-315 [334409]
    Other proteins in same PDB: d5h5ga1, d5h5ga3, d5h5gb1, d5h5gb3
    automated match to d4m8ia2
    complexed with ca, gdp
2. Domain for 5h5h:
  - Domain d5h5ha2: 5h5h A:209-315 [334430]
    Other proteins in same PDB: d5h5ha1, d5h5ha3
    automated match to d4m8ia2
    complexed with ca, gdp; mutant
3. Domain for 5h5i:
  - Domain d5h5ia2: 5h5i A:209-315 [334518]
    Other proteins in same PDB: d5h5ia1, d5h5ia3
    automated match to d4m8ia2
    complexed with gdp; mutant
4. Domain for 5xdt:
  - Domain d5xdta2: 5xdt A:209-315 [337321]
    Other proteins in same PDB: d5xdta1, d5xdta3
    automated match to d4m8ia2
    complexed with ca, gdp, mb3, zi7
5. Domain for 5xdu:
  - Domain d5xdua2: 5xdu A:209-315 [337465]
    Other proteins in same PDB: d5xdua1, d5xdua3
    automated match to d4m8ia2
    complexed with ca, gdp, zi6
6. Domain for 5xdv:
  - Domain d5xdva2: 5xdv A:209-315 [337353]
    Other proteins in same PDB: d5xdva1, d5xdva3
    automated match to d4m8ia2
    complexed with ca, gdp, zi6
7. Domain for 5xdw:
  - Domain d5xdwa2: 5xdw A:209-315 [337414]
    Other proteins in same PDB: d5xdwa1, d5xdwa3
    automated match to d4m8ia2
    complexed with ca, gdp
Staphylococcus epidermidis [TaxId:176279] [227789] (1 PDB entry)
- Domain for 4m8i:
  - Domain d4m8ia2: 4m8i A:209-321 [227790]
    Other proteins in same PDB: d4m8ia1
    automated match to d4dxda2
    complexed with gdp, so4

More info for Protein automated matches from d.79.2.0: automated matches

Timeline for Protein automated matches from d.79.2.0: automated matches:

Protein automated matches from d.79.2.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.79.2.0: automated matches appears in SCOPe 2.06
Protein automated matches from d.79.2.0: automated matches appears in the current release, SCOPe 2.08