SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2180205Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2180489Superfamily d.79.2: Tubulin C-terminal domain-like [55307] (2 families) (S)
  5. 2180721Family d.79.2.0: automated matches [227141] (1 protein)
    not a true family
  6. 2180722Protein automated matches [226843] (8 species)
    not a true protein

Species:

  1. 2180723Bacillus subtilis [TaxId:1423] [225339] (3 PDB entries)
    1. Domain for 2vam:
    2. Domain for 2vxy:
    3. Domains for 4u39:
      1. 2180726Domain d4u39a2: 4u39 A:209-314 [270647]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      2. 2180727Domain d4u39b2: 4u39 B:211-314 [270626]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      3. 2180728Domain d4u39c2: 4u39 C:212-314 [270645]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      4. 2180729Domain d4u39d2: 4u39 D:211-314 [270643]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      5. 2180730Domain d4u39e2: 4u39 E:211-313 [270636]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      6. 2180731Domain d4u39f2: 4u39 F:211-314 [270628]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      7. 2180732Domain d4u39g2: 4u39 G:212-314 [270649]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      8. 2180733Domain d4u39i2: 4u39 I:215-313 [270651]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
  2. 2180734Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [259120] (1 PDB entry)
  3. 2180736Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [224936] (2 PDB entries)
    1. Domains for 4ffb:
      1. 2180737Domain d4ffba2: 4ffb A:247-439 [221162]
        Other proteins in same PDB: d4ffba1, d4ffbb1
        automated match to d1jffa2
        complexed with gtp, mg
      2. 2180738Domain d4ffbb2: 4ffb B:244-432 [221164]
        Other proteins in same PDB: d4ffba1, d4ffbb1
        automated match to d1jffb2
        complexed with gtp, mg
    2. Domain for 4u3j:
  4. 2180740Human (Homo sapiens) [TaxId:9606] [224983] (3 PDB entries)
    1. Domain for 1z5v:
    2. Domain for 1z5w:
    3. Domains for 3cb2:
      1. 2180741Domain d3cb2a2: 3cb2 A:247-446 [208845]
        Other proteins in same PDB: d3cb2a1, d3cb2b1
        automated match to d1jffb2
        complexed with gdp
      2. 2180742Domain d3cb2b2: 3cb2 B:247-446 [208847]
        Other proteins in same PDB: d3cb2a1, d3cb2b1
        automated match to d1jffb2
        complexed with gdp
  5. 2180745Staphylococcus aureus [TaxId:158878] [267906] (1 PDB entry)
  6. 2180748Staphylococcus epidermidis [TaxId:176279] [227789] (1 PDB entry)
  7. 2284171Staphylococcus aureus [TaxId:1280] [327472] (2 PDB entries)
    1. Domain for 5mn4:
    2. Domains for 5mn5:
      1. 2284172Domain d5mn5a2: 5mn5 A:209-315 [327473]
        Other proteins in same PDB: d5mn5a1, d5mn5b1
        automated match to d4dxda2
        complexed with gtp
      2. 2284193Domain d5mn5b2: 5mn5 B:209-315 [327494]
        Other proteins in same PDB: d5mn5a1, d5mn5b1
        automated match to d4dxda2
        complexed with gtp
  8. 2291107Staphylococcus aureus [TaxId:282458] [334408] (3 PDB entries)
    1. Domains for 5h5g:
      1. 2291108Domain d5h5gb2: 5h5g B:209-315 [334409]
        Other proteins in same PDB: d5h5ga1, d5h5ga3, d5h5gb1, d5h5gb3
        automated match to d4m8ia2
        complexed with ca, gdp
      2. 2291114Domain d5h5ga2: 5h5g A:209-316 [334415]
        Other proteins in same PDB: d5h5ga1, d5h5ga3, d5h5gb1, d5h5gb3
        automated match to d4m8ia2
        complexed with ca, gdp
    2. Domain for 5h5h:
    3. Domain for 5h5i:

More info for Protein automated matches from d.79.2.0: automated matches

Timeline for Protein automated matches from d.79.2.0: automated matches: