Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2180205Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2180489Superfamily d.79.2: Tubulin C-terminal domain-like [55307] (2 families) (S)
  5. 2180721Family d.79.2.0: automated matches [227141] (1 protein)
    not a true family
  6. 2180722Protein automated matches [226843] (8 species)
    not a true protein

Species:

  1. 2180723Bacillus subtilis [TaxId:1423] [225339] (3 PDB entries)
    1. Domain for 2vam:
    2. Domain for 2vxy:
    3. Domains for 4u39:
      1. 2180726Domain d4u39a2: 4u39 A:209-314 [270647]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      2. 2180727Domain d4u39b2: 4u39 B:211-314 [270626]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      3. 2180728Domain d4u39c2: 4u39 C:212-314 [270645]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      4. 2180729Domain d4u39d2: 4u39 D:211-314 [270643]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      5. 2180730Domain d4u39e2: 4u39 E:211-313 [270636]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      6. 2180731Domain d4u39f2: 4u39 F:211-314 [270628]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      7. 2180732Domain d4u39g2: 4u39 G:212-314 [270649]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
      8. 2180733Domain d4u39i2: 4u39 I:215-313 [270651]
        Other proteins in same PDB: d4u39a1, d4u39b1, d4u39c1, d4u39d1, d4u39e1, d4u39f1, d4u39g1, d4u39h1, d4u39i1
        automated match to d2vxya2
        complexed with po4
  2. 2180734Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [259120] (1 PDB entry)
  3. 2180736Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [224936] (2 PDB entries)
    1. Domains for 4ffb:
      1. 2180737Domain d4ffba2: 4ffb A:247-439 [221162]
        Other proteins in same PDB: d4ffba1, d4ffbb1
        automated match to d1jffa2
        complexed with gtp, mg
      2. 2180738Domain d4ffbb2: 4ffb B:244-432 [221164]
        Other proteins in same PDB: d4ffba1, d4ffbb1
        automated match to d1jffb2
        complexed with gtp, mg
    2. Domain for 4u3j:
  4. 2180740Human (Homo sapiens) [TaxId:9606] [224983] (3 PDB entries)
    1. Domain for 1z5v:
    2. Domain for 1z5w:
    3. Domains for 3cb2:
      1. 2180741Domain d3cb2a2: 3cb2 A:247-446 [208845]
        Other proteins in same PDB: d3cb2a1, d3cb2b1
        automated match to d1jffb2
        complexed with gdp
      2. 2180742Domain d3cb2b2: 3cb2 B:247-446 [208847]
        Other proteins in same PDB: d3cb2a1, d3cb2b1
        automated match to d1jffb2
        complexed with gdp
  5. 2180745Staphylococcus aureus [TaxId:158878] [267906] (1 PDB entry)
  6. 2180748Staphylococcus epidermidis [TaxId:176279] [227789] (1 PDB entry)
  7. 2284171Staphylococcus aureus [TaxId:1280] [327472] (2 PDB entries)
    1. Domain for 5mn4:
    2. Domains for 5mn5:
      1. 2284172Domain d5mn5a2: 5mn5 A:209-315 [327473]
        Other proteins in same PDB: d5mn5a1, d5mn5b1
        automated match to d4dxda2
        complexed with gtp
      2. 2284193Domain d5mn5b2: 5mn5 B:209-315 [327494]
        Other proteins in same PDB: d5mn5a1, d5mn5b1
        automated match to d4dxda2
        complexed with gtp
  8. 2291107Staphylococcus aureus [TaxId:282458] [334408] (7 PDB entries)
    1. Domains for 5h5g:
      1. 2291108Domain d5h5gb2: 5h5g B:209-315 [334409]
        Other proteins in same PDB: d5h5ga1, d5h5ga3, d5h5gb1, d5h5gb3
        automated match to d4m8ia2
        complexed with ca, gdp
      2. 2291114Domain d5h5ga2: 5h5g A:209-316 [334415]
        Other proteins in same PDB: d5h5ga1, d5h5ga3, d5h5gb1, d5h5gb3
        automated match to d4m8ia2
        complexed with ca, gdp
    2. Domain for 5h5h:
    3. Domain for 5h5i:
    4. Domain for 5xdt:
    5. Domain for 5xdu:
    6. Domain for 5xdv:
    7. Domain for 5xdw:

More info for Protein automated matches from d.79.2.0: automated matches

Timeline for Protein automated matches from d.79.2.0: automated matches: