Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2618030Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2624340Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. 2624341Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families) (S)
  5. 2624342Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)
  6. 2624373Protein automated matches [190109] (8 species)
    not a true protein

Species:

  1. 2624374Desulfomicrobium baculatum [TaxId:525897] [226721] (6 PDB entries)
    1. Domains for 4kl8:
      1. 2624379Domain d4kl8l_: 4kl8 L: [224351]
        Other proteins in same PDB: d4kl8s_, d4kl8t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2624380Domain d4kl8m_: 4kl8 M: [224352]
        Other proteins in same PDB: d4kl8s_, d4kl8t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    2. Domains for 4kn9:
      1. 2624375Domain d4kn9l_: 4kn9 L: [224403]
        Other proteins in same PDB: d4kn9s_, d4kn9t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2624376Domain d4kn9m_: 4kn9 M: [224404]
        Other proteins in same PDB: d4kn9s_, d4kn9t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    3. Domains for 4ko1:
      1. 2624377Domain d4ko1l_: 4ko1 L: [224415]
        Other proteins in same PDB: d4ko1s_, d4ko1t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
      2. 2624378Domain d4ko1m_: 4ko1 M: [224416]
        Other proteins in same PDB: d4ko1s_, d4ko1t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
    4. Domains for 4ko2:
      1. 2624381Domain d4ko2l_: 4ko2 L: [224419]
        Other proteins in same PDB: d4ko2s_, d4ko2t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
      2. 2624382Domain d4ko2m_: 4ko2 M: [224420]
        Other proteins in same PDB: d4ko2s_, d4ko2t_
        automated match to d1cc1l_
        complexed with ca, fco, gol, h2s, ni, sf4
    5. Domains for 4ko3:
      1. 2624383Domain d4ko3l_: 4ko3 L: [224423]
        Other proteins in same PDB: d4ko3s_, d4ko3t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2624384Domain d4ko3m_: 4ko3 M: [224424]
        Other proteins in same PDB: d4ko3s_, d4ko3t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    6. Domains for 4ko4:
      1. 2624385Domain d4ko4l_: 4ko4 L: [224427]
        Other proteins in same PDB: d4ko4s_, d4ko4t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2624386Domain d4ko4m_: 4ko4 M: [224428]
        Other proteins in same PDB: d4ko4s_, d4ko4t_
        automated match to d1cc1l_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
  2. 2624387Desulfovibrio fructosivorans [TaxId:596151] [270659] (3 PDB entries)
    1. Domains for 4ud2:
      1. 2624397Domain d4ud2q_: 4ud2 Q: [270672]
        Other proteins in same PDB: d4ud2a_, d4ud2b_, d4ud2c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2624398Domain d4ud2r_: 4ud2 R: [270667]
        Other proteins in same PDB: d4ud2a_, d4ud2b_, d4ud2c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2624399Domain d4ud2s_: 4ud2 S: [270673]
        Other proteins in same PDB: d4ud2a_, d4ud2b_, d4ud2c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
    2. Domains for 4ud6:
      1. 2624394Domain d4ud6q_: 4ud6 Q: [270660]
        Other proteins in same PDB: d4ud6a_, d4ud6b_, d4ud6c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2624395Domain d4ud6r_: 4ud6 R: [270661]
        Other proteins in same PDB: d4ud6a_, d4ud6b_, d4ud6c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2624396Domain d4ud6s_: 4ud6 S: [270664]
        Other proteins in same PDB: d4ud6a_, d4ud6b_, d4ud6c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
    3. Domains for 4ueq:
      1. 2624388Domain d4ueqq_: 4ueq Q: [270692]
        Other proteins in same PDB: d4ueqa_, d4ueqb_, d4ueqc_, d4ueqd_, d4ueqe_, d4ueqf_
        automated match to d1yrqh_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      2. 2624389Domain d4ueqr_: 4ueq R: [270696]
        Other proteins in same PDB: d4ueqa_, d4ueqb_, d4ueqc_, d4ueqd_, d4ueqe_, d4ueqf_
        automated match to d1yrqh_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      3. 2624390Domain d4ueqs_: 4ueq S: [270694]
        Other proteins in same PDB: d4ueqa_, d4ueqb_, d4ueqc_, d4ueqd_, d4ueqe_, d4ueqf_
        automated match to d1yrqh_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      4. 2624391Domain d4ueqt_: 4ueq T: [270702]
        Other proteins in same PDB: d4ueqa_, d4ueqb_, d4ueqc_, d4ueqd_, d4ueqe_, d4ueqf_
        automated match to d1yrqh_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      5. 2624392Domain d4uequ_: 4ueq U: [270703]
        Other proteins in same PDB: d4ueqa_, d4ueqb_, d4ueqc_, d4ueqd_, d4ueqe_, d4ueqf_
        automated match to d1yrqh_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      6. 2624393Domain d4ueqv_: 4ueq V: [270699]
        Other proteins in same PDB: d4ueqa_, d4ueqb_, d4ueqc_, d4ueqd_, d4ueqe_, d4ueqf_
        automated match to d1yrqh_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
  3. 2624400Desulfovibrio fructosivorans [TaxId:878] [269398] (3 PDB entries)
    1. Domains for 4ucq:
      1. 2624407Domain d4ucqq_: 4ucq Q: [345450]
        Other proteins in same PDB: d4ucqa_, d4ucqb_, d4ucqc_
        automated match to d4ud6r_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2624408Domain d4ucqr_: 4ucq R: [345451]
        Other proteins in same PDB: d4ucqa_, d4ucqb_, d4ucqc_
        automated match to d4ud6r_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2624409Domain d4ucqs_: 4ucq S: [345452]
        Other proteins in same PDB: d4ucqa_, d4ucqb_, d4ucqc_
        automated match to d4ud6r_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    2. Domains for 4ucw:
      1. 2624404Domain d4ucwq_: 4ucw Q: [269401]
        Other proteins in same PDB: d4ucwa_, d4ucwb_, d4ucwc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2624405Domain d4ucwr_: 4ucw R: [269399]
        Other proteins in same PDB: d4ucwa_, d4ucwb_, d4ucwc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2624406Domain d4ucws_: 4ucw S: [269405]
        Other proteins in same PDB: d4ucwa_, d4ucwb_, d4ucwc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    3. Domains for 4ucx:
      1. 2624401Domain d4ucxq_: 4ucx Q: [269400]
        Other proteins in same PDB: d4ucxa_, d4ucxb_, d4ucxc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2624402Domain d4ucxr_: 4ucx R: [269410]
        Other proteins in same PDB: d4ucxa_, d4ucxb_, d4ucxc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2624403Domain d4ucxs_: 4ucx S: [269409]
        Other proteins in same PDB: d4ucxa_, d4ucxb_, d4ucxc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
  4. 2624410Desulfovibrio fructosovorans [TaxId:596151] [270697] (1 PDB entry)
  5. 2624414Desulfovibrio fructosovorans [TaxId:878] [188150] (12 PDB entries)
    1. Domains for 1yqw:
      1. 2624433Domain d1yqwq_: 1yqw Q: [162282]
        Other proteins in same PDB: d1yqwa_, d1yqwb_, d1yqwc_
        automated match to d1e3db_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
      2. 2624434Domain d1yqwr_: 1yqw R: [162283]
        Other proteins in same PDB: d1yqwa_, d1yqwb_, d1yqwc_
        automated match to d1e3db_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
      3. 2624435Domain d1yqws_: 1yqw S: [162284]
        Other proteins in same PDB: d1yqwa_, d1yqwb_, d1yqwc_
        automated match to d1e3db_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
    2. Domains for 1yrq:
      1. 2624442Domain d1yrqh_: 1yrq H: [162292]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      2. 2624443Domain d1yrqi_: 1yrq I: [162293]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      3. 2624444Domain d1yrqj_: 1yrq J: [162294]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      4. 2624445Domain d1yrqk_: 1yrq K: [162295]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      5. 2624446Domain d1yrqm_: 1yrq M: [162296]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
      6. 2624447Domain d1yrqn_: 1yrq N: [162297]
        Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
        automated match to d1e3db_
        complexed with f3s, fco, mg, ni, sf4
    3. Domains for 3cur:
      1. 2624427Domain d3curh_: 3cur H: [173475]
        Other proteins in same PDB: d3cura_, d3curb_, d3curc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
      2. 2624428Domain d3curi_: 3cur I: [173476]
        Other proteins in same PDB: d3cura_, d3curb_, d3curc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
      3. 2624429Domain d3curj_: 3cur J: [173477]
        Other proteins in same PDB: d3cura_, d3curb_, d3curc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
    4. Domains for 3cus:
      1. 2624430Domain d3cusq_: 3cus Q: [173481]
        Other proteins in same PDB: d3cusa_, d3cusb_, d3cusc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2624431Domain d3cusr_: 3cus R: [173482]
        Other proteins in same PDB: d3cusa_, d3cusb_, d3cusc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2624432Domain d3cuss_: 3cus S: [173483]
        Other proteins in same PDB: d3cusa_, d3cusb_, d3cusc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    5. Domains for 3h3x:
      1. 2624439Domain d3h3xq_: 3h3x Q: [177172]
        Other proteins in same PDB: d3h3xa_, d3h3xb_, d3h3xc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2624440Domain d3h3xr_: 3h3x R: [177173]
        Other proteins in same PDB: d3h3xa_, d3h3xb_, d3h3xc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2624441Domain d3h3xs_: 3h3x S: [177174]
        Other proteins in same PDB: d3h3xa_, d3h3xb_, d3h3xc_
        automated match to d1e3db_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    6. Domains for 4ue2:
      1. 2624436Domain d4ue2q_: 4ue2 Q: [270682]
        Other proteins in same PDB: d4ue2a_, d4ue2b_, d4ue2c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2624437Domain d4ue2r_: 4ue2 R: [270686]
        Other proteins in same PDB: d4ue2a_, d4ue2b_, d4ue2c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2624438Domain d4ue2s_: 4ue2 S: [270684]
        Other proteins in same PDB: d4ue2a_, d4ue2b_, d4ue2c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
    7. Domains for 4ue6:
      1. 2624448Domain d4ue6q_: 4ue6 Q: [270676]
        Other proteins in same PDB: d4ue6a_, d4ue6b_, d4ue6c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2624449Domain d4ue6r_: 4ue6 R: [270679]
        Other proteins in same PDB: d4ue6a_, d4ue6b_, d4ue6c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2624450Domain d4ue6s_: 4ue6 S: [270681]
        Other proteins in same PDB: d4ue6a_, d4ue6b_, d4ue6c_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
    8. Domains for 4upe:
      1. 2624424Domain d4upeq_: 4upe Q: [260828]
        Other proteins in same PDB: d4upea_, d4upeb_, d4upec_
        automated match to d1yrqh_
        complexed with ca, f3s, fco, gol, mes, ni, po4, sf4; mutant
      2. 2624425Domain d4uper_: 4upe R: [263989]
        Other proteins in same PDB: d4upea_, d4upeb_, d4upec_
        automated match to d1yrqh_
        complexed with ca, f3s, fco, gol, mes, ni, po4, sf4; mutant
      3. 2624426Domain d4upes_: 4upe S: [263990]
        Other proteins in same PDB: d4upea_, d4upeb_, d4upec_
        automated match to d1yrqh_
        complexed with ca, f3s, fco, gol, mes, ni, po4, sf4; mutant
    9. Domains for 4upv:
      1. 2624422Domain d4upvq_: 4upv Q: [260829]
        Other proteins in same PDB: d4upva_, d4upvb_
        automated match to d1yrqh_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
      2. 2624423Domain d4upvr_: 4upv R: [263995]
        Other proteins in same PDB: d4upva_, d4upvb_
        automated match to d1yrqh_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
    10. Domains for 4uql:
      1. 2624415Domain d4uqlq_: 4uql Q: [267473]
        Other proteins in same PDB: d4uqla_, d4uqlb_
        automated match to d1yrqh_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
      2. 2624416Domain d4uqlr_: 4uql R: [267474]
        Other proteins in same PDB: d4uqla_, d4uqlb_
        automated match to d1yrqh_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
    11. Domains for 4uqp:
      1. 2624417Domain d4uqpq_: 4uqp Q: [267477]
        Other proteins in same PDB: d4uqpa_, d4uqpb_
        automated match to d1yrqh_
        complexed with f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
      2. 2624418Domain d4uqpr_: 4uqp R: [267478]
        Other proteins in same PDB: d4uqpa_, d4uqpb_
        automated match to d1yrqh_
        complexed with f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
    12. Domains for 4urh:
      1. 2624419Domain d4urhq_: 4urh Q: [260835]
        Other proteins in same PDB: d4urha_, d4urhb_, d4urhc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2624420Domain d4urhr_: 4urh R: [260834]
        Other proteins in same PDB: d4urha_, d4urhb_, d4urhc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2624421Domain d4urhs_: 4urh S: [263999]
        Other proteins in same PDB: d4urha_, d4urhb_, d4urhc_
        automated match to d1yrqh_
        complexed with f3s, fco, gol, mg, ni, sf4
  6. 2624451Desulfovibrio gigas [TaxId:879] [188148] (1 PDB entry)
  7. 2624453Desulfovibrio vulgaris [TaxId:882] [189199] (13 PDB entries)
    1. Domain for 2wpn:
    2. Domain for 3ze6:
    3. Domain for 3ze7:
    4. Domain for 3ze8:
    5. Domain for 3ze9:
    6. Domain for 3zea:
    7. Domains for 6z7r:
      1. 2624467Domain d6z7rb_: 6z7r B: [393863]
        Other proteins in same PDB: d6z7ra_, d6z7rc_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, kr, ni, sf4
      2. 2624468Domain d6z7rd_: 6z7r D: [393868]
        Other proteins in same PDB: d6z7ra_, d6z7rc_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, kr, ni, sf4
    8. Domains for 6z8j:
      1. 2624455Domain d6z8jb_: 6z8j B: [393889]
        Other proteins in same PDB: d6z8ja_, d6z8jc_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, gol, h2s, ni, oxy, sf4
      2. 2624456Domain d6z8jd_: 6z8j D: [393900]
        Other proteins in same PDB: d6z8ja_, d6z8jc_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, gol, h2s, ni, oxy, sf4
    9. Domain for 6z8m:
      • 2624454Domain d6z8mb_: 6z8m B: [393871]
        Other proteins in same PDB: d6z8ma_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, gol, h2s, ni, oxy, sf4
    10. Domains for 6z8o:
      1. 2624471Domain d6z8ob_: 6z8o B: [393873]
        Other proteins in same PDB: d6z8oa_, d6z8oc_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, kr, ni, sf4
      2. 2624472Domain d6z8od_: 6z8o D: [393884]
        Other proteins in same PDB: d6z8oa_, d6z8oc_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, kr, ni, sf4
    11. Domains for 6z9g:
      1. 2624463Domain d6z9gb_: 6z9g B: [393909]
        Other proteins in same PDB: d6z9ga_, d6z9gc_, d6z9ge_, d6z9gg_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, ni, sf4
      2. 2624464Domain d6z9gd_: 6z9g D: [393887]
        Other proteins in same PDB: d6z9ga_, d6z9gc_, d6z9ge_, d6z9gg_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, ni, sf4
      3. 2624465Domain d6z9gf_: 6z9g F: [393893]
        Other proteins in same PDB: d6z9ga_, d6z9gc_, d6z9ge_, d6z9gg_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, ni, sf4
      4. 2624466Domain d6z9gh_: 6z9g H: [393910]
        Other proteins in same PDB: d6z9ga_, d6z9gc_, d6z9ge_, d6z9gg_
        automated match to d4kl8l_
        complexed with 6ml, cl, fco, fe2, h2s, ni, sf4
    12. Domain for 6z9o:
    13. Domain for 6za1:
  8. 2624473Desulfovibrio vulgaris [TaxId:883] [186833] (12 PDB entries)
    1. Domain for 1wuh:
    2. Domain for 1wui:
    3. Domain for 1wuj:
    4. Domain for 1wuk:
    5. Domain for 1wul:
    6. Domain for 4u9h:
    7. Domain for 4u9i:
    8. Domain for 5xle:
    9. Domain for 5xlf:
    10. Domain for 5xlg:
    11. Domain for 5xlh:
    12. Domain for 5y4n:

More info for Protein automated matches from e.18.1.1: Nickel-iron hydrogenase, large subunit

Timeline for Protein automated matches from e.18.1.1: Nickel-iron hydrogenase, large subunit: