SCOPe 2.07: Domain d4upvr_: 4upv R:

Lineage for d4upvr_ (4upv R:)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
   3 domains: (1) all-alpha; (2&3) alpha+beta

4. Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families)

5. Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)

6. Protein automated matches [190109] (8 species)
   not a true protein

7. Species Desulfovibrio fructosovorans [TaxId:878] [188150] (12 PDB entries)

8. Domain d4upvr_: 4upv R: [263995]
   Other proteins in same PDB: d4upva_, d4upvb_
   automated match to d1yrqh_
   complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant

Details for d4upvr_

PDB Entry: 4upv, 1.52 Å

PDB Description: low x-ray dose structure of a ni-a ni-sox mixture of the d. fructosovorans nife-hydrogenase l122a mutant

PDB Compounds: (R:) nife-hydrogenase large subunit

SCOPe Domain Sequences for d4upvr_:

Sequence; same for both SEQRES and ATOM records:

>d4upvr_ e.18.1.1 (R:) automated matches {Desulfovibrio fructosovorans [TaxId: 878]}
kptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprda
qhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhaha
ldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayf
lgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqglt
kdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspek
hlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytkldd
kdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgr
taargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwir
ikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpci
acgvh

Timeline for d4upvr_:

• d4upvr_ first appeared in SCOPe 2.05
  
• d4upvr_ appears in SCOPe 2.06
  
• d4upvr_ appears in the current release, SCOPe 2.08