PDB entry 4uew

View 4uew on RCSB PDB site
Description: Structure of H2-treated anaerobically purified D. fructosovorans NiFe- hydrogenase
Class: oxidoreductase
Keywords: oxidoreductase, nife-hydrogenase, ni-sib state, ni-c state
Deposited on 2014-12-20, released 2015-03-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-04-22, with a file datestamp of 2015-04-17.
Experiment type: XRAY
Resolution: 2.08 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: DESULFOVIBRIO FRUCTOSIVORANS JJ [TaxId:596151]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4uewa_
  • Chain 'B':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: DESULFOVIBRIO FRUCTOSIVORANS JJ [TaxId:596151]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4uewb_
  • Chain 'C':
    Compound: Periplasmic [NiFe] hydrogenase Small subunit
    Species: DESULFOVIBRIO FRUCTOSIVORANS JJ [TaxId:596151]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4uewc_
  • Chain 'Q':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: DESULFOVIBRIO FRUCTOSOVORANS JJ [TaxId:596151]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4uewq_
  • Chain 'R':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: DESULFOVIBRIO FRUCTOSOVORANS JJ [TaxId:596151]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4uewr_
  • Chain 'S':
    Compound: Periplasmic [NiFe] hydrogenase Large subunit
    Species: DESULFOVIBRIO FRUCTOSOVORANS JJ [TaxId:596151]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4uews_
  • Heterogens: SF4, F3S, GOL, FCO, NI, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4uewA (A:)
    ltakhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaal
    hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
    qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
    elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
    aghpclgcsepdfwdtmtpfyeqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4uewA (A:)
    akhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaalhq
    alegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqk
    akpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygel
    vhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqag
    hpclgcsepdfwdtmtpfyeqg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4uewB (B:)
    ltakhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaal
    hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
    qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
    elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
    aghpclgcsepdfwdtmtpfyeqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4uewB (B:)
    akhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaalhq
    alegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqk
    akpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygel
    vhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqag
    hpclgcsepdfwdtmtpfyeqg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4uewC (C:)
    ltakhrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaal
    hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
    qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
    elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
    aghpclgcsepdfwdtmtpfyeqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4uewC (C:)
    hrpsvvwlhnaectgcteaairtikpyidalildtisldyqetimaaageaaeaalhqal
    egkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqkak
    pnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygelvh
    dncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqaghp
    clgcsepdfwdtmtpfyeqg
    

  • Chain 'Q':
    Sequence, based on SEQRES records: (download)
    >4uewQ (Q:)
    maeskptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrd
    prdaqhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfy
    hlhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgift
    nayflgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsny
    qgltkdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatdds
    spekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkyt
    klddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhs
    tlgrtaargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgals
    hwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhaf
    dpciacgvh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4uewQ (Q:)
    ptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprdaq
    hftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlhal
    dwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayfl
    gghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqgltk
    dplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspekh
    latsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytklddk
    dhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgrt
    aargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwiri
    kgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpcia
    cgvh
    

  • Chain 'R':
    Sequence, based on SEQRES records: (download)
    >4uewR (R:)
    maeskptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrd
    prdaqhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfy
    hlhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgift
    nayflgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsny
    qgltkdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatdds
    spekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkyt
    klddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhs
    tlgrtaargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgals
    hwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhaf
    dpciacgvh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4uewR (R:)
    kptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprda
    qhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlha
    ldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayf
    lgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqglt
    kdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspek
    hlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytkldd
    kdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgr
    taargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwir
    ikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpci
    acgvh
    

  • Chain 'S':
    Sequence, based on SEQRES records: (download)
    >4uewS (S:)
    maeskptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrd
    prdaqhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfy
    hlhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgift
    nayflgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsny
    qgltkdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatdds
    spekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkyt
    klddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhs
    tlgrtaargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgals
    hwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhaf
    dpciacgvh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4uewS (S:)
    ptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprdaq
    hftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlhal
    dwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayfl
    gghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqgltk
    dplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspekh
    latsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytklddk
    dhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgrt
    aargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwiri
    kgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpcia
    cgvh