SCOPe 2.01: Protein: Proliferating cell nuclear antigen (PCNA)

Lineage for Protein: Proliferating cell nuclear antigen (PCNA)

Root: SCOPe 2.01
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.131: DNA clamp [55978] (1 superfamily)
contains two helices and two beta sheets
duplication: fold has internal pseudo two-fold symmetry
Superfamily d.131.1: DNA clamp [55979] (2 families)
Family d.131.1.2: DNA polymerase processivity factor [55983] (4 proteins)
duplication: consists of two domains of this fold
Protein Proliferating cell nuclear antigen (PCNA) [55989] (5 species)

Species:

Archaeoglobus fulgidus [TaxId:2234] [103254] (3 PDB entries)
1. Domains for 1rwz:
  1. Domain d1rwza1: 1rwz A:1-122 [98005]
  2. Domain d1rwza2: 1rwz A:123-244 [98006]
2. Domains for 1rxm:
  1. Domain d1rxma1: 1rxm A:1-122 [98035]
    complexed with a FEN-1 peptide, chain B
  2. Domain d1rxma2: 1rxm A:123-245 [98036]
    complexed with a FEN-1 peptide, chain B
3. Domains for 1rxz:
  1. Domain d1rxza1: 1rxz A:1-122 [98067]
    complexed with a FEN-1 peptide, chain B
    protein/DNA complex
  2. Domain d1rxza2: 1rxz A:123-245 [98068]
    complexed with a FEN-1 peptide, chain B
    protein/DNA complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55990] (4 PDB entries)
Uniprot P15873
1. Domains for 1plq:
  1. Domain d1plqa1: 1plq A:1-126 [41388]
    CASP1
    complexed with hg
  2. Domain d1plqa2: 1plq A:127-258 [41389]
    CASP1
    complexed with hg
2. Domains for 1plr:
  1. Domain d1plra1: 1plr A:1-126 [41390]
  2. Domain d1plra2: 1plr A:127-258 [41391]
3. Domains for 1sxj:
  1. Domain d1sxjf1: 1sxj F:1-126 [106091]
    Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2
    complexed with adp, atg, mg
  2. Domain d1sxjf2: 1sxj F:127-256 [106092]
    Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2
    complexed with adp, atg, mg
  3. Domain d1sxjg1: 1sxj G:1-126 [106093]
    Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2
    complexed with adp, atg, mg
  4. Domain d1sxjg2: 1sxj G:127-255 [106094]
    Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2
    complexed with adp, atg, mg
  5. Domain d1sxjh1: 1sxj H:1-126 [106095]
    Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2
    complexed with adp, atg, mg
  6. Domain d1sxjh2: 1sxj H:127-254 [106096]
    Other proteins in same PDB: d1sxja1, d1sxja2, d1sxjb1, d1sxjb2, d1sxjc1, d1sxjc2, d1sxjd1, d1sxjd2, d1sxje1, d1sxje2
    complexed with adp, atg, mg
4. Domains for 2od8:
  1. Domain d2od8a1: 2od8 A:1-126 [139024]
    automatically matched to d1plq_1
  2. Domain d2od8a2: 2od8 A:127-255 [139025]
    automatically matched to d1plq_2
Human (Homo sapiens) [TaxId:9606] [55991] (7 PDB entries)
Uniprot P12004
1. Domains for 1axc:
  1. Domain d1axca1: 1axc A:1-126 [41392]
    protein/DNA complex
  2. Domain d1axca2: 1axc A:127-255 [41393]
    protein/DNA complex
  3. Domain d1axcc1: 1axc C:1-126 [41394]
    protein/DNA complex
  4. Domain d1axcc2: 1axc C:127-255 [41395]
    protein/DNA complex
  5. Domain d1axce1: 1axc E:1-126 [41396]
    protein/DNA complex
  6. Domain d1axce2: 1axc E:127-255 [41397]
    protein/DNA complex
2. Domains for 1u76:
  1. Domain d1u76a1: 1u76 A:1-126 [113077]
    complexed with a target peptide
  2. Domain d1u76a2: 1u76 A:127-255 [113078]
    complexed with a target peptide
  3. Domain d1u76c1: 1u76 C:1-126 [113079]
    complexed with a target peptide
  4. Domain d1u76c2: 1u76 C:127-255 [113080]
    complexed with a target peptide
  5. Domain d1u76e1: 1u76 E:1-126 [113081]
    complexed with a target peptide
  6. Domain d1u76e2: 1u76 E:127-255 [113082]
    complexed with a target peptide
3. Domains for 1u7b:
  1. Domain d1u7ba1: 1u7b A:1-126 [113083]
    complexed with a target peptide
  2. Domain d1u7ba2: 1u7b A:127-255 [113084]
    complexed with a target peptide
4. Domains for 1ul1:
  1. Domain d1ul1a1: 1ul1 A:1-126 [119684]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automatically matched to d1axca1
    protein/DNA complex; complexed with mg
  2. Domain d1ul1a2: 1ul1 A:127-255 [119685]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automatically matched to d1axca2
    protein/DNA complex; complexed with mg
  3. Domain d1ul1b1: 1ul1 B:1-126 [119686]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automatically matched to d1axca1
    protein/DNA complex; complexed with mg
  4. Domain d1ul1b2: 1ul1 B:127-255 [119687]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automatically matched to d1axca2
    protein/DNA complex; complexed with mg
  5. Domain d1ul1c1: 1ul1 C:1-126 [119688]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automatically matched to d1axca1
    protein/DNA complex; complexed with mg
  6. Domain d1ul1c2: 1ul1 C:127-255 [119689]
    Other proteins in same PDB: d1ul1x1, d1ul1x2, d1ul1y1, d1ul1y2, d1ul1z1, d1ul1z2
    automatically matched to d1axca2
    protein/DNA complex; complexed with mg
5. Domains for 1vyj:
  1. Domain d1vyja1: 1vyj A:1-126 [120530]
    automatically matched to d1axca1
    protein/DNA complex
  2. Domain d1vyja2: 1vyj A:127-255 [120531]
    automatically matched to d1axca2
    protein/DNA complex
  3. Domain d1vyjc1: 1vyj C:1-126 [120532]
    automatically matched to d1axca1
    protein/DNA complex
  4. Domain d1vyjc2: 1vyj C:127-255 [120533]
    automatically matched to d1axca2
    protein/DNA complex
  5. Domain d1vyje1: 1vyj E:1-126 [120534]
    automatically matched to d1axca1
    protein/DNA complex
  6. Domain d1vyje2: 1vyj E:127-255 [120535]
    automatically matched to d1axca2
    protein/DNA complex
  7. Domain d1vyjg1: 1vyj G:1-126 [120536]
    automatically matched to d1axca1
    protein/DNA complex
  8. Domain d1vyjg2: 1vyj G:127-255 [120537]
    automatically matched to d1axca2
    protein/DNA complex
  9. Domain d1vyji1: 1vyj I:1-126 [120538]
    automatically matched to d1axca1
    protein/DNA complex
  10. Domain d1vyji2: 1vyj I:127-255 [120539]
    automatically matched to d1axca2
    protein/DNA complex
  11. Domain d1vyjk1: 1vyj K:1-126 [120540]
    automatically matched to d1axca1
    protein/DNA complex
  12. Domain d1vyjk2: 1vyj K:127-255 [120541]
    automatically matched to d1axca2
    protein/DNA complex
6. Domains for 1vym:
  1. Domain d1vyma1: 1vym A:1-126 [120542]
    automatically matched to d1axca1
  2. Domain d1vyma2: 1vym A:127-255 [120543]
    automatically matched to d1axca2
  3. Domain d1vymb1: 1vym B:1-126 [120544]
    automatically matched to d1axca1
  4. Domain d1vymb2: 1vym B:127-255 [120545]
    automatically matched to d1axca2
  5. Domain d1vymc1: 1vym C:1-126 [120546]
    automatically matched to d1axca1
  6. Domain d1vymc2: 1vym C:127-255 [120547]
    automatically matched to d1axca2
7. Domains for 1w60:
  1. Domain d1w60a1: 1w60 A:1-126 [120648]
    automatically matched to d1axca1
  2. Domain d1w60a2: 1w60 A:127-255 [120649]
    automatically matched to d1axca2
  3. Domain d1w60b1: 1w60 B:1-126 [120650]
    automatically matched to d1axca1
  4. Domain d1w60b2: 1w60 B:127-255 [120651]
    automatically matched to d1axca2
Pyrococcus furiosus [TaxId:2261] [55992] (4 PDB entries)
1. Domains for 1ge8:
  1. Domain d1ge8a1: 1ge8 A:2-117 [41398]
  2. Domain d1ge8a2: 1ge8 A:126-247 [41399]
2. Domains for 1isq:
  1. Domain d1isqa1: 1isq A:2-119 [76779]
    protein/DNA complex
  2. Domain d1isqa2: 1isq A:126-247 [76780]
    protein/DNA complex
3. Domains for 1iz4:
  1. Domain d1iz4a1: 1iz4 A:2-120 [83832]
    mutant
  2. Domain d1iz4a2: 1iz4 A:126-247 [83833]
    mutant
4. Domains for 1iz5:
  1. Domain d1iz5a1: 1iz5 A:2-120 [83834]
    mutant
  2. Domain d1iz5a2: 1iz5 A:126-246 [83835]
    mutant
  3. Domain d1iz5b1: 1iz5 B:2-120 [83836]
    mutant
  4. Domain d1iz5b2: 1iz5 B:126-246 [83837]
    mutant
Sulfolobus tokodaii [TaxId:111955] [111175] (1 PDB entry)
Uniprot Q975N2
- Domains for 1ud9:
  1. Domain d1ud9a1: 1ud9 A:1-119 [107768]
    complexed with zn
  2. Domain d1ud9a2: 1ud9 A:127-245 [107769]
    complexed with zn
  3. Domain d1ud9b1: 1ud9 B:1-119 [107770]
    complexed with zn
  4. Domain d1ud9b2: 1ud9 B:127-245 [107771]
    complexed with zn
  5. Domain d1ud9c1: 1ud9 C:1-119 [107772]
    complexed with zn
  6. Domain d1ud9c2: 1ud9 C:127-245 [107773]
    complexed with zn
  7. Domain d1ud9d1: 1ud9 D:1-119 [107774]
    complexed with zn
  8. Domain d1ud9d2: 1ud9 D:127-245 [107775]
    complexed with zn

More info for Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor

Timeline for Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor:

Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor first appeared (with stable ids) in SCOP 1.55, called Protein Prolifirating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor
Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor appears in SCOP 1.75
Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor appears in SCOPe 2.02
Protein Proliferating cell nuclear antigen (PCNA) from d.131.1.2: DNA polymerase processivity factor appears in the current release, SCOPe 2.08