SCOPe 2.05: Protein: Alpha chain

Lineage for Protein: Alpha chain

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families)

(S)

each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures

Family d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain [55094] (2 proteins)
C-terminal domain is all-alpha
Protein Alpha chain [55095] (3 species)

Species:

Methanobacterium thermoautotrophicum [TaxId:145262] [55096] (11 PDB entries)

Domains for 1hbm:
1. Domain d1hbma2: 1hbm A:2-269 [60889]
  Other proteins in same PDB: d1hbma1, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd1, d1hbme1, d1hbme2, d1hbmf_
  complexed with cl, f43, gol, mg, na, sht, zn
2. Domain d1hbmd2: 1hbm D:2-269 [60894]
  Other proteins in same PDB: d1hbma1, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd1, d1hbme1, d1hbme2, d1hbmf_
  complexed with cl, f43, gol, mg, na, sht, zn
Domains for 1hbn:
1. Domain d1hbna2: 1hbn A:2-269 [60899]
  Other proteins in same PDB: d1hbna1, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd1, d1hbne1, d1hbne2, d1hbnf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbnd2: 1hbn D:2-269 [60904]
  Other proteins in same PDB: d1hbna1, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd1, d1hbne1, d1hbne2, d1hbnf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1hbo:
1. Domain d1hboa2: 1hbo A:2-269 [60909]
  Other proteins in same PDB: d1hboa1, d1hbob1, d1hbob2, d1hboc_, d1hbod1, d1hboe1, d1hboe2, d1hbof_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbod2: 1hbo D:2-269 [60914]
  Other proteins in same PDB: d1hboa1, d1hbob1, d1hbob2, d1hboc_, d1hbod1, d1hboe1, d1hboe2, d1hbof_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1hbu:
1. Domain d1hbua2: 1hbu A:2-269 [60919]
  Other proteins in same PDB: d1hbua1, d1hbub1, d1hbub2, d1hbuc_, d1hbud1, d1hbue1, d1hbue2, d1hbuf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbud2: 1hbu D:2-269 [60924]
  Other proteins in same PDB: d1hbua1, d1hbub1, d1hbub2, d1hbuc_, d1hbud1, d1hbue1, d1hbue2, d1hbuf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1mro:
1. Domain d1mroa2: 1mro A:2-269 [39443]
  Other proteins in same PDB: d1mroa1, d1mrob1, d1mrob2, d1mroc_, d1mrod1, d1mroe1, d1mroe2, d1mrof_
  complexed with com, f43, gol, na, tp7, zn
2. Domain d1mrod2: 1mro D:2-269 [39444]
  Other proteins in same PDB: d1mroa1, d1mrob1, d1mrob2, d1mroc_, d1mrod1, d1mroe1, d1mroe2, d1mrof_
  complexed with com, f43, gol, na, tp7, zn

Domains for 3m1v:

Domain d3m1va1: 3m1v A:2-269 [199769]
Other proteins in same PDB: d3m1va2, d3m1vb1, d3m1vb2, d3m1vc_, d3m1vd2, d3m1ve1, d3m1ve2, d3m1vf_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, tp7, zn

Domain d3m1vd1: 3m1v D:2-269 [199773]
Other proteins in same PDB: d3m1va2, d3m1vb1, d3m1vb2, d3m1vc_, d3m1vd2, d3m1ve1, d3m1ve2, d3m1vf_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, tp7, zn

Domains for 3m2r:

Domain d3m2ra1: 3m2r A:2-269 [199777]
Other proteins in same PDB: d3m2ra2, d3m2rb1, d3m2rb2, d3m2rc_, d3m2rd2, d3m2re1, d3m2re2, d3m2rf_
automated match to d1hbna2
complexed with com, edo, f43, mg, peg, tp7, tpz, zn

Domain d3m2rd1: 3m2r D:2-269 [199781]
Other proteins in same PDB: d3m2ra2, d3m2rb1, d3m2rb2, d3m2rc_, d3m2rd2, d3m2re1, d3m2re2, d3m2rf_
automated match to d1hbna2
complexed with com, edo, f43, mg, peg, tp7, tpz, zn

Domains for 3m2u:

Domain d3m2ua1: 3m2u A:2-269 [199785]
Other proteins in same PDB: d3m2ua2, d3m2ub1, d3m2ub2, d3m2uc_, d3m2ud2, d3m2ue1, d3m2ue2, d3m2uf_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, tp7, txz, zn

Domain d3m2ud1: 3m2u D:2-269 [199789]
Other proteins in same PDB: d3m2ua2, d3m2ub1, d3m2ub2, d3m2uc_, d3m2ud2, d3m2ue1, d3m2ue2, d3m2uf_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, tp7, txz, zn

Domains for 3m2v:

Domain d3m2va1: 3m2v A:2-269 [199793]
Other proteins in same PDB: d3m2va2, d3m2vb1, d3m2vb2, d3m2vc_, d3m2vd2, d3m2ve1, d3m2ve2, d3m2vf_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, tp7, xp8, zn

Domain d3m2vd1: 3m2v D:2-269 [199797]
Other proteins in same PDB: d3m2va2, d3m2vb1, d3m2vb2, d3m2vc_, d3m2vd2, d3m2ve1, d3m2ve2, d3m2vf_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, tp7, xp8, zn

Domains for 3m30:

Domain d3m30a1: 3m30 A:2-269 [199801]
Other proteins in same PDB: d3m30a2, d3m30b1, d3m30b2, d3m30c_, d3m30d2, d3m30e1, d3m30e2, d3m30f_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn

Domain d3m30d1: 3m30 D:2-269 [199805]
Other proteins in same PDB: d3m30a2, d3m30b1, d3m30b2, d3m30c_, d3m30d2, d3m30e1, d3m30e2, d3m30f_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn

Domains for 3m32:

Domain d3m32a1: 3m32 A:2-269 [199809]
Other proteins in same PDB: d3m32a2, d3m32b1, d3m32b2, d3m32c_, d3m32d2, d3m32e1, d3m32e2, d3m32f_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, sht, tp7, zn

Domain d3m32d1: 3m32 D:2-269 [199813]
Other proteins in same PDB: d3m32a2, d3m32b1, d3m32b2, d3m32c_, d3m32d2, d3m32e1, d3m32e2, d3m32f_
automated match to d1hbna2
complexed with act, com, edo, f43, mg, peg, sht, tp7, zn

Methanopyrus kandleri [TaxId:2320] [55097] (1 PDB entry)
- Domains for 1e6v:
  1. Domain d1e6va2: 1e6v A:8-272 [39445]
    Other proteins in same PDB: d1e6va1, d1e6vb1, d1e6vb2, d1e6vc_, d1e6vd1, d1e6ve1, d1e6ve2, d1e6vf_
    complexed with com, f43, tp7
  2. Domain d1e6vd2: 1e6v D:8-272 [39446]
    Other proteins in same PDB: d1e6va1, d1e6vb1, d1e6vb2, d1e6vc_, d1e6vd1, d1e6ve1, d1e6ve2, d1e6vf_
    complexed with com, f43, tp7
Methanosarcina barkeri [TaxId:2208] [55098] (1 PDB entry)
- Domains for 1e6y:
  1. Domain d1e6ya2: 1e6y A:1002-1283 [39447]
    Other proteins in same PDB: d1e6ya1, d1e6yb1, d1e6yb2, d1e6yc_, d1e6yd1, d1e6ye1, d1e6ye2, d1e6yf_
    complexed with com, f43, gol, tp7
  2. Domain d1e6yd2: 1e6y D:4002-4283 [39448]
    Other proteins in same PDB: d1e6ya1, d1e6yb1, d1e6yb2, d1e6yc_, d1e6yd1, d1e6ye1, d1e6ye2, d1e6yf_
    complexed with com, f43, gol, tp7

More info for Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain

Timeline for Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain:

Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in SCOPe 2.04
Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in SCOPe 2.06
Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in the current release, SCOPe 2.08