Lineage for Protein: Alpha chain

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families) (S)
    each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
  5. Family d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain [55094] (3 proteins)
    C-terminal domain is all-alpha
  6. Protein Alpha chain [55095] (3 species)

Species:

  1. Methanobacterium thermoautotrophicum [TaxId:145262] [55096] (11 PDB entries)
    1. Domains for 1hbm:
      1. Domain d1hbma2: 1hbm A:2-269 [60889]
        Other proteins in same PDB: d1hbma1, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd1, d1hbme1, d1hbme2, d1hbmf_
        complexed with cl, f43, gol, mg, na, sht, zn
      2. Domain d1hbmd2: 1hbm D:2-269 [60894]
        Other proteins in same PDB: d1hbma1, d1hbmb1, d1hbmb2, d1hbmc_, d1hbmd1, d1hbme1, d1hbme2, d1hbmf_
        complexed with cl, f43, gol, mg, na, sht, zn
    2. Domains for 1hbn:
      1. Domain d1hbna2: 1hbn A:2-269 [60899]
        Other proteins in same PDB: d1hbna1, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd1, d1hbne1, d1hbne2, d1hbnf_
        complexed with cl, com, f43, gol, mg, na, tp7, zn
      2. Domain d1hbnd2: 1hbn D:2-269 [60904]
        Other proteins in same PDB: d1hbna1, d1hbnb1, d1hbnb2, d1hbnc_, d1hbnd1, d1hbne1, d1hbne2, d1hbnf_
        complexed with cl, com, f43, gol, mg, na, tp7, zn
    3. Domains for 1hbo:
      1. Domain d1hboa2: 1hbo A:2-269 [60909]
        Other proteins in same PDB: d1hboa1, d1hbob1, d1hbob2, d1hboc_, d1hbod1, d1hboe1, d1hboe2, d1hbof_
        complexed with cl, com, f43, gol, mg, na, tp7, zn
      2. Domain d1hbod2: 1hbo D:2-269 [60914]
        Other proteins in same PDB: d1hboa1, d1hbob1, d1hbob2, d1hboc_, d1hbod1, d1hboe1, d1hboe2, d1hbof_
        complexed with cl, com, f43, gol, mg, na, tp7, zn
    4. Domains for 1hbu:
      1. Domain d1hbua2: 1hbu A:2-269 [60919]
        Other proteins in same PDB: d1hbua1, d1hbub1, d1hbub2, d1hbuc_, d1hbud1, d1hbue1, d1hbue2, d1hbuf_
        complexed with cl, com, f43, gol, mg, na, tp7, zn
      2. Domain d1hbud2: 1hbu D:2-269 [60924]
        Other proteins in same PDB: d1hbua1, d1hbub1, d1hbub2, d1hbuc_, d1hbud1, d1hbue1, d1hbue2, d1hbuf_
        complexed with cl, com, f43, gol, mg, na, tp7, zn
    5. Domains for 1mro:
      1. Domain d1mroa2: 1mro A:2-269 [39443]
        Other proteins in same PDB: d1mroa1, d1mrob1, d1mrob2, d1mroc_, d1mrod1, d1mroe1, d1mroe2, d1mrof_
        complexed with com, f43, gol, na, tp7, zn
      2. Domain d1mrod2: 1mro D:2-269 [39444]
        Other proteins in same PDB: d1mroa1, d1mrob1, d1mrob2, d1mroc_, d1mrod1, d1mroe1, d1mroe2, d1mrof_
        complexed with com, f43, gol, na, tp7, zn
    6. Domains for 3m1v:
      1. Domain d3m1va1: 3m1v A:2-269 [199769]
        Other proteins in same PDB: d3m1va2, d3m1vb1, d3m1vb2, d3m1vc_, d3m1vd2, d3m1ve1, d3m1ve2, d3m1vf_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, tp7, zn
      2. Domain d3m1vd1: 3m1v D:2-269 [199773]
        Other proteins in same PDB: d3m1va2, d3m1vb1, d3m1vb2, d3m1vc_, d3m1vd2, d3m1ve1, d3m1ve2, d3m1vf_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, tp7, zn
    7. Domains for 3m2r:
      1. Domain d3m2ra1: 3m2r A:2-269 [199777]
        Other proteins in same PDB: d3m2ra2, d3m2rb1, d3m2rb2, d3m2rc_, d3m2rd2, d3m2re1, d3m2re2, d3m2rf_
        automated match to d1hbna2
        complexed with com, edo, f43, mg, peg, tp7, tpz, zn
      2. Domain d3m2rd1: 3m2r D:2-269 [199781]
        Other proteins in same PDB: d3m2ra2, d3m2rb1, d3m2rb2, d3m2rc_, d3m2rd2, d3m2re1, d3m2re2, d3m2rf_
        automated match to d1hbna2
        complexed with com, edo, f43, mg, peg, tp7, tpz, zn
    8. Domains for 3m2u:
      1. Domain d3m2ua1: 3m2u A:2-269 [199785]
        Other proteins in same PDB: d3m2ua2, d3m2ub1, d3m2ub2, d3m2uc_, d3m2ud2, d3m2ue1, d3m2ue2, d3m2uf_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, tp7, txz, zn
      2. Domain d3m2ud1: 3m2u D:2-269 [199789]
        Other proteins in same PDB: d3m2ua2, d3m2ub1, d3m2ub2, d3m2uc_, d3m2ud2, d3m2ue1, d3m2ue2, d3m2uf_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, tp7, txz, zn
    9. Domains for 3m2v:
      1. Domain d3m2va1: 3m2v A:2-269 [199793]
        Other proteins in same PDB: d3m2va2, d3m2vb1, d3m2vb2, d3m2vc_, d3m2vd2, d3m2ve1, d3m2ve2, d3m2vf_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, tp7, xp8, zn
      2. Domain d3m2vd1: 3m2v D:2-269 [199797]
        Other proteins in same PDB: d3m2va2, d3m2vb1, d3m2vb2, d3m2vc_, d3m2vd2, d3m2ve1, d3m2ve2, d3m2vf_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, tp7, xp8, zn
    10. Domains for 3m30:
      1. Domain d3m30a1: 3m30 A:2-269 [199801]
        Other proteins in same PDB: d3m30a2, d3m30b1, d3m30b2, d3m30c_, d3m30d2, d3m30e1, d3m30e2, d3m30f_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn
      2. Domain d3m30d1: 3m30 D:2-269 [199805]
        Other proteins in same PDB: d3m30a2, d3m30b1, d3m30b2, d3m30c_, d3m30d2, d3m30e1, d3m30e2, d3m30f_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn
    11. Domains for 3m32:
      1. Domain d3m32a1: 3m32 A:2-269 [199809]
        Other proteins in same PDB: d3m32a2, d3m32b1, d3m32b2, d3m32c_, d3m32d2, d3m32e1, d3m32e2, d3m32f_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, sht, tp7, zn
      2. Domain d3m32d1: 3m32 D:2-269 [199813]
        Other proteins in same PDB: d3m32a2, d3m32b1, d3m32b2, d3m32c_, d3m32d2, d3m32e1, d3m32e2, d3m32f_
        automated match to d1hbna2
        complexed with act, com, edo, f43, mg, peg, sht, tp7, zn
  2. Methanopyrus kandleri [TaxId:2320] [55097] (1 PDB entry)
  3. Methanosarcina barkeri [TaxId:2208] [55098] (1 PDB entry)

More info for Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain

Timeline for Protein Alpha chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain: