SCOPe 2.07: Protein: Cyclodextrin glycosyltransferase

Lineage for Protein: Cyclodextrin glycosyltransferase

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein Cyclodextrin glycosyltransferase [51452] (5 species)
contains two more all-beta domains, one is Immunoglobulin-like and the other is trasthyretin-like

Species:

Bacillus circulans, different strains [TaxId:1397] [51453] (36 PDB entries)
1. Domain for 1cdg:
  - Domain d1cdga4: 1cdg A:1-406 [28710]
    Other proteins in same PDB: d1cdga1, d1cdga2, d1cdga3
    complexed with ca, mal
2. Domain for 1cgt:
  - Domain d1cgta4: 1cgt A:1-406 [28709]
    Other proteins in same PDB: d1cgta1, d1cgta2, d1cgta3
    complexed with ca
3. Domain for 1cgu:
  - Domain d1cgua4: 1cgu A:1-406 [28732]
    Other proteins in same PDB: d1cgua1, d1cgua2, d1cgua3
    complexed with ca
4. Domain for 1cgv:
  - Domain d1cgva4: 1cgv A:1-406 [28714]
    Other proteins in same PDB: d1cgva1, d1cgva2, d1cgva3
    complexed with ca, mal; mutant
5. Domain for 1cgw:
  - Domain d1cgwa4: 1cgw A:1-406 [28716]
    Other proteins in same PDB: d1cgwa1, d1cgwa2, d1cgwa3
    complexed with ca, mal; mutant
6. Domain for 1cgx:
  - Domain d1cgxa4: 1cgx A:1-406 [28726]
    Other proteins in same PDB: d1cgxa1, d1cgxa2, d1cgxa3
    complexed with ca, mal; mutant
7. Domain for 1cgy:
  - Domain d1cgya4: 1cgy A:1-406 [28717]
    Other proteins in same PDB: d1cgya1, d1cgya2, d1cgya3
    complexed with ca, mal; mutant
8. Domain for 1cxe:
  - Domain d1cxea4: 1cxe A:1-406 [28711]
    Other proteins in same PDB: d1cxea1, d1cxea2, d1cxea3
    complexed with ca, mal
9. Domain for 1cxf:
  - Domain d1cxfa4: 1cxf A:1-406 [28735]
    Other proteins in same PDB: d1cxfa1, d1cxfa2, d1cxfa3
    complexed with acx, ca, mal; mutant
10. Domain for 1cxh:
  - Domain d1cxha4: 1cxh A:1-406 [28715]
    Other proteins in same PDB: d1cxha1, d1cxha2, d1cxha3
    complexed with ca, mal
11. Domain for 1cxi:
  - Domain d1cxia4: 1cxi A:1-406 [28712]
    Other proteins in same PDB: d1cxia1, d1cxia2, d1cxia3
    complexed with ca, mal
12. Domain for 1cxk:
  - Domain d1cxka4: 1cxk A:1-406 [28729]
    Other proteins in same PDB: d1cxka1, d1cxka2, d1cxka3
    complexed with ca, glc
13. Domain for 1cxl:
  - Domain d1cxla4: 1cxl A:1-406 [28723]
    Other proteins in same PDB: d1cxla1, d1cxla2, d1cxla3
    complexed with ca, mpd
14. Domain for 1d3c:
  - Domain d1d3ca4: 1d3c A:1-406 [28721]
    Other proteins in same PDB: d1d3ca1, d1d3ca2, d1d3ca3
    complexed with ca, mpd
15. Domain for 1dtu:
  - Domain d1dtua4: 1dtu A:1-406 [28734]
    Other proteins in same PDB: d1dtua1, d1dtua2, d1dtua3
    complexed with adh, bgc, ca, g6d, glc; mutant
16. Domain for 1eo5:
  - Domain d1eo5a4: 1eo5 A:1-406 [28722]
    Other proteins in same PDB: d1eo5a1, d1eo5a2, d1eo5a3
    complexed with ca, mpd
17. Domain for 1eo7:
  - Domain d1eo7a4: 1eo7 A:1-406 [28736]
    Other proteins in same PDB: d1eo7a1, d1eo7a2, d1eo7a3
    complexed with ca
18. Domain for 1kck:
  - Domain d1kcka4: 1kck A:1-406 [68444]
    Other proteins in same PDB: d1kcka1, d1kcka2, d1kcka3
    complexed with adh, bgc, ca, g6d, glc; mutant
19. Domain for 1kcl:
  - Domain d1kcla4: 1kcl A:1-406 [68448]
    Other proteins in same PDB: d1kcla1, d1kcla2, d1kcla3
    complexed with ca, glc, mal, mpd; mutant
20. Domain for 1ot1:
  - Domain d1ot1a4: 1ot1 A:1-406 [87395]
    Other proteins in same PDB: d1ot1a1, d1ot1a2, d1ot1a3
    complexed with acy, ca, epe, mal, mpd; mutant
21. Domain for 1ot2:
  - Domain d1ot2a4: 1ot2 A:1-406 [87399]
    Other proteins in same PDB: d1ot2a1, d1ot2a2, d1ot2a3
    complexed with acy, ca, epe, glc, mal, mpd; mutant
22. Domain for 1pez:
  - Domain d1peza4: 1pez A:1-406 [94603]
    Other proteins in same PDB: d1peza1, d1peza2, d1peza3
    complexed with acy, ca, epe, mal, mpd; mutant
23. Domain for 1pj9:
  - Domain d1pj9a4: 1pj9 A:1-406 [94757]
    Other proteins in same PDB: d1pj9a1, d1pj9a2, d1pj9a3
    complexed with acy, ca, glc, mal, mpd; mutant
24. Domains for 1tcm:
  1. Domain d1tcma4: 1tcm A:1-406 [28727]
    Other proteins in same PDB: d1tcma1, d1tcma2, d1tcma3, d1tcmb1, d1tcmb2, d1tcmb3
    complexed with ca; mutant
  2. Domain d1tcmb4: 1tcm B:1-406 [28728]
    Other proteins in same PDB: d1tcma1, d1tcma2, d1tcma3, d1tcmb1, d1tcmb2, d1tcmb3
    complexed with ca; mutant
25. Domains for 1ukq:
  1. Domain d1ukqa4: 1ukq A:1-406 [99512]
    Other proteins in same PDB: d1ukqa1, d1ukqa2, d1ukqa3, d1ukqb1, d1ukqb2, d1ukqb3
    complexed with aci, bgc, ca, g6d, glc
  2. Domain d1ukqb4: 1ukq B:1-406 [99516]
    Other proteins in same PDB: d1ukqa1, d1ukqa2, d1ukqa3, d1ukqb1, d1ukqb2, d1ukqb3
    complexed with aci, bgc, ca, g6d, glc
26. Domains for 1uks:
  1. Domain d1uksa4: 1uks A:1-406 [99520]
    Other proteins in same PDB: d1uksa1, d1uksa2, d1uksa3, d1uksb1, d1uksb2, d1uksb3
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1uksb4: 1uks B:1-406 [99524]
    Other proteins in same PDB: d1uksa1, d1uksa2, d1uksa3, d1uksb1, d1uksb2, d1uksb3
    complexed with aci, ca, gal, glc, gld; mutant
27. Domains for 1ukt:
  1. Domain d1ukta4: 1ukt A:1-406 [99528]
    Other proteins in same PDB: d1ukta1, d1ukta2, d1ukta3, d1uktb1, d1uktb2, d1uktb3
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1uktb4: 1ukt B:1-406 [99532]
    Other proteins in same PDB: d1ukta1, d1ukta2, d1ukta3, d1uktb1, d1uktb2, d1uktb3
    complexed with aci, ca, gal, glc, gld; mutant
28. Domain for 2cxg:
  - Domain d2cxga4: 2cxg A:1-406 [28733]
    Other proteins in same PDB: d2cxga1, d2cxga2, d2cxga3
    complexed with aci, ca, g6d, glc
29. Domain for 2dij:
  - Domain d2dija4: 2dij A:1-406 [28730]
    Other proteins in same PDB: d2dija1, d2dija2, d2dija3
    complexed with adh, ca, g6d, glc; mutant
30. Domain for 3cgt:
  - Domain d3cgta4: 3cgt A:1-406 [28713]
    Other proteins in same PDB: d3cgta1, d3cgta2, d3cgta3
    complexed with bcd, ca
31. Domain for 4cgt:
  - Domain d4cgta4: 4cgt A:1-406 [28719]
    Other proteins in same PDB: d4cgta1, d4cgta2, d4cgta3
    complexed with ca; mutant
32. Domain for 5cgt:
  - Domain d5cgta4: 5cgt A:1-406 [28718]
    Other proteins in same PDB: d5cgta1, d5cgta2, d5cgta3
    complexed with ca, glc; mutant
33. Domain for 6cgt:
  - Domain d6cgta4: 6cgt A:1-406 [28731]
    Other proteins in same PDB: d6cgta1, d6cgta2, d6cgta3
    complexed with ca; mutant
34. Domain for 7cgt:
  - Domain d7cgta4: 7cgt A:1-406 [28720]
    Other proteins in same PDB: d7cgta1, d7cgta2, d7cgta3
    complexed with ca; mutant
35. Domain for 8cgt:
  - Domain d8cgta4: 8cgt A:1-406 [28725]
    Other proteins in same PDB: d8cgta1, d8cgta2, d8cgta3
    complexed with ca, tm6
36. Domain for 9cgt:
  - Domain d9cgta4: 9cgt A:1-406 [28724]
    Other proteins in same PDB: d9cgta1, d9cgta2, d9cgta3
    complexed with ca, tm5
Bacillus sp. 1011, alkaliphilic [TaxId:1410] [51456] (8 PDB entries)
Uniprot P05618
1. Domains for 1d7f:
  1. Domain d1d7fa4: 1d7f A:1-406 [28742]
    Other proteins in same PDB: d1d7fa1, d1d7fa2, d1d7fa3, d1d7fb1, d1d7fb2, d1d7fb3
    complexed with ca
  2. Domain d1d7fb4: 1d7f B:1-406 [28743]
    Other proteins in same PDB: d1d7fa1, d1d7fa2, d1d7fa3, d1d7fb1, d1d7fb2, d1d7fb3
    complexed with ca
2. Domains for 1ded:
  1. Domain d1deda4: 1ded A:1-406 [28744]
    Other proteins in same PDB: d1deda1, d1deda2, d1deda3, d1dedb1, d1dedb2, d1dedb3
    complexed with ca, qps
  2. Domain d1dedb4: 1ded B:1-406 [28745]
    Other proteins in same PDB: d1deda1, d1deda2, d1deda3, d1dedb1, d1dedb2, d1dedb3
    complexed with ca, qps
3. Domains for 1i75:
  1. Domain d1i75a4: 1i75 A:1-406 [61872]
    Other proteins in same PDB: d1i75a1, d1i75a2, d1i75a3, d1i75b1, d1i75b2, d1i75b3
    complexed with ca, noj
  2. Domain d1i75b4: 1i75 B:1-406 [61876]
    Other proteins in same PDB: d1i75a1, d1i75a2, d1i75a3, d1i75b1, d1i75b2, d1i75b3
    complexed with ca, noj
4. Domains for 1pam:
  1. Domain d1pama4: 1pam A:1-406 [28740]
    Other proteins in same PDB: d1pama1, d1pama2, d1pama3, d1pamb1, d1pamb2, d1pamb3
    complexed with ca
  2. Domain d1pamb4: 1pam B:1-406 [28741]
    Other proteins in same PDB: d1pama1, d1pama2, d1pama3, d1pamb1, d1pamb2, d1pamb3
    complexed with ca
5. Domains for 1v3j:
  1. Domain d1v3ja4: 1v3j A:1-406 [108308]
    Other proteins in same PDB: d1v3ja1, d1v3ja2, d1v3ja3, d1v3jb1, d1v3jb2, d1v3jb3
    complexed with ca; mutant
  2. Domain d1v3jb4: 1v3j B:1-406 [108312]
    Other proteins in same PDB: d1v3ja1, d1v3ja2, d1v3ja3, d1v3jb1, d1v3jb2, d1v3jb3
    complexed with ca; mutant
6. Domains for 1v3k:
  1. Domain d1v3ka4: 1v3k A:1-406 [108316]
    Other proteins in same PDB: d1v3ka1, d1v3ka2, d1v3ka3, d1v3kb1, d1v3kb2, d1v3kb3
    complexed with ca; mutant
  2. Domain d1v3kb4: 1v3k B:1-406 [108320]
    Other proteins in same PDB: d1v3ka1, d1v3ka2, d1v3ka3, d1v3kb1, d1v3kb2, d1v3kb3
    complexed with ca; mutant
7. Domains for 1v3l:
  1. Domain d1v3la4: 1v3l A:1-406 [108324]
    Other proteins in same PDB: d1v3la1, d1v3la2, d1v3la3, d1v3lb1, d1v3lb2, d1v3lb3
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1v3lb4: 1v3l B:1-406 [108328]
    Other proteins in same PDB: d1v3la1, d1v3la2, d1v3la3, d1v3lb1, d1v3lb2, d1v3lb3
    complexed with aci, ca, gal, glc, gld; mutant
8. Domains for 1v3m:
  1. Domain d1v3ma4: 1v3m A:1-406 [108332]
    Other proteins in same PDB: d1v3ma1, d1v3ma2, d1v3ma3, d1v3mb1, d1v3mb2, d1v3mb3
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1v3mb4: 1v3m B:1-406 [108336]
    Other proteins in same PDB: d1v3ma1, d1v3ma2, d1v3ma3, d1v3mb1, d1v3mb2, d1v3mb3
    complexed with aci, ca, gal, glc, gld; mutant
Bacillus stearothermophilus [TaxId:1422] [51454] (1 PDB entry)
- Domain for 1cyg:
  - Domain d1cyga4: 1cyg A:1-402 [28737]
    Other proteins in same PDB: d1cyga1, d1cyga2, d1cyga3
    complexed with ca
Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId:1422] [51455] (2 PDB entries)
1. Domain for 1qho:
  - Domain d1qhoa4: 1qho A:1-407 [28738]
    Other proteins in same PDB: d1qhoa1, d1qhoa2, d1qhoa3
    complexed with abd, ca, mal, so4
2. Domain for 1qhp:
  - Domain d1qhpa4: 1qhp A:1-407 [28739]
    Other proteins in same PDB: d1qhpa1, d1qhpa2, d1qhpa3
    complexed with ca, mal, so4
Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId:33950] [51457] (4 PDB entries)
1. Domain for 1a47:
  - Domain d1a47a4: 1a47 A:1-406 [28747]
    Other proteins in same PDB: d1a47a1, d1a47a2, d1a47a3
    complexed with adh, ca, g6d, glc
2. Domain for 1ciu:
  - Domain d1ciua4: 1ciu A:1-406 [28746]
    Other proteins in same PDB: d1ciua1, d1ciua2, d1ciua3
    complexed with ca
3. Domain for 3bmv:
  - Domain d3bmva4: 3bmv A:1-406 [155419]
    Other proteins in same PDB: d3bmva1, d3bmva2, d3bmva3
    automated match to d1ciua4
    complexed with ca, gol, so4; mutant
4. Domain for 3bmw:
  - Domain d3bmwa4: 3bmw A:1-406 [155423]
    Other proteins in same PDB: d3bmwa1, d3bmwa2, d3bmwa3
    automated match to d1ciua4
    complexed with aci, ca, cl, g6d, glc, gol, so4; mutant

More info for Protein Cyclodextrin glycosyltransferase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Cyclodextrin glycosyltransferase from c.1.8.1: Amylase, catalytic domain:

Protein Cyclodextrin glycosyltransferase from c.1.8.1: Amylase, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Cyclodextrin glycosyltransferase from c.1.8.1: alpha-Amylases, N-terminal domain
Protein Cyclodextrin glycosyltransferase from c.1.8.1: Amylase, catalytic domain appears in SCOPe 2.06
Protein Cyclodextrin glycosyltransferase from c.1.8.1: Amylase, catalytic domain appears in the current release, SCOPe 2.08