SCOPe 2.08: Protein: Lysyl-tRNA synthetase (LysRS)

Lineage for Protein: Lysyl-tRNA synthetase (LysRS)

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.40: OB-fold [50198] (17 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (18 families)
Family b.40.4.1: Anticodon-binding domain [50250] (2 proteins)
barrel, closed; n=5, S=10
Protein Lysyl-tRNA synthetase (LysRS) [50256] (3 species)

Species:

Escherichia coli, gene lysS [TaxId:562] [50257] (4 PDB entries)
1. Domain for 1bbu:
  - Domain d1bbua1: 1bbu A:11-154 [25254]
    Other proteins in same PDB: d1bbua2
    protein/RNA complex; complexed with lys
2. Domain for 1bbw:
  - Domain d1bbwa1: 1bbw A:11-153 [25255]
    Other proteins in same PDB: d1bbwa2
3. Domain for 1krs:
  - Domain d1krsa_: 1krs A: [25256]
4. Domain for 1krt:
  - Domain d1krta_: 1krt A: [25257]
Escherichia coli, gene lysU [TaxId:562] [50258] (5 PDB entries)
1. Domain for 1e1o:
  - Domain d1e1oa1: 1e1o A:11-153 [25258]
    Other proteins in same PDB: d1e1oa2
    protein/RNA complex; complexed with gol, lys
2. Domain for 1e1t:
  - Domain d1e1ta1: 1e1t A:11-153 [25264]
    Other proteins in same PDB: d1e1ta2
    protein/RNA complex; complexed with gol, lad, mg, pop
3. Domain for 1e22:
  - Domain d1e22a1: 1e22 A:11-153 [25259]
    Other proteins in same PDB: d1e22a2
    protein/RNA complex; complexed with acp, gol, lys, mg
4. Domain for 1e24:
  - Domain d1e24a1: 1e24 A:11-153 [25260]
    Other proteins in same PDB: d1e24a2
    protein/RNA complex; complexed with atp, gol, lys, mn
5. Domains for 1lyl:
  1. Domain d1lyla1: 1lyl A:14-153 [25261]
    Other proteins in same PDB: d1lyla2, d1lylb2, d1lylc2
    protein/RNA complex; complexed with lys
  2. Domain d1lylb1: 1lyl B:14-153 [25262]
    Other proteins in same PDB: d1lyla2, d1lylb2, d1lylc2
    protein/RNA complex; complexed with lys
  3. Domain d1lylc1: 1lyl C:14-153 [25263]
    Other proteins in same PDB: d1lyla2, d1lylb2, d1lylc2
    protein/RNA complex; complexed with lys
Geobacillus stearothermophilus [TaxId:1422] [225968] (1 PDB entry)
- Domains for 3a74:
  1. Domain d3a74a1: 3a74 A:4-145 [208133]
    Other proteins in same PDB: d3a74a2, d3a74b2, d3a74c2, d3a74d2
    automated match to d1bbua1
    protein/RNA complex; complexed with b4p, lyn, mg
  2. Domain d3a74b1: 3a74 B:4-145 [208135]
    Other proteins in same PDB: d3a74a2, d3a74b2, d3a74c2, d3a74d2
    automated match to d1bbua1
    protein/RNA complex; complexed with b4p, lyn, mg
  3. Domain d3a74c1: 3a74 C:4-145 [208137]
    Other proteins in same PDB: d3a74a2, d3a74b2, d3a74c2, d3a74d2
    automated match to d1bbua1
    protein/RNA complex; complexed with b4p, lyn, mg
  4. Domain d3a74d1: 3a74 D:4-145 [208139]
    Other proteins in same PDB: d3a74a2, d3a74b2, d3a74c2, d3a74d2
    automated match to d1bbua1
    protein/RNA complex; complexed with b4p, lyn, mg

More info for Protein Lysyl-tRNA synthetase (LysRS) from b.40.4.1: Anticodon-binding domain

Timeline for Protein Lysyl-tRNA synthetase (LysRS) from b.40.4.1: Anticodon-binding domain:

Protein Lysyl-tRNA synthetase (LysRS) from b.40.4.1: Anticodon-binding domain first appeared (with stable ids) in SCOP 1.55
Protein Lysyl-tRNA synthetase (LysRS) from b.40.4.1: Anticodon-binding domain appears in SCOPe 2.07