PDB entry 1lyl

View 1lyl on RCSB PDB site
Description: lysyl-tRNA synthetase (lysu) (e.c.6.1.1.6) complexed with lysine
Class: ligase (synthetase)
Keywords: ligase (synthetase)
Deposited on 1995-05-03, released 1995-10-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.193
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysyl-tRNA synthetase (lysu)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1lyla1, d1lyla2
  • Chain 'B':
    Compound: lysyl-tRNA synthetase (lysu)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1lylb1, d1lylb2
  • Chain 'C':
    Compound: lysyl-tRNA synthetase (lysu)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1lylc1, d1lylc2
  • Heterogens: LYS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1lylA (A:)
seqetrganeaidfndelrnrreklaalrqqgvafpndfrrdhtsdqlheefdakdnqel
eslnievsvagrmmtrrimgkasfvtlqdvggriqlyvardslpegvyndqfkkwdlgdi
igargtlfktqtgelsihctelrlltkalrplpdkfhglqdqevryrqryldliandksr
qtfvvrskilaairqfmvargfmevetpmmqvipggasarpfithhnaldldmylriape
lylkrlvvggfervfeinrnfrnegisvrhnpeftmmelymayadyhdlielteslfrtl
aqevlgttkvtygehvfdfgkpfekltmreaikkyrpetdmadldnfdaakalaesigit
vekswglgrivteifdevaeahliqptfiteypaevsplarrndvnpeitdrfeffiggr
eigngfselndaedqaerfqeqvnakaagddeamfydedyvtaleyglpptaglgigidr
mimlftnshtirdvilfpamrpqk

    Sequence, based on observed residues (ATOM records): (download) 
    >1lylA (A:)
fndelrnrreklaalrqqgvafpndfrrdhtsdqlheefdakdnqeleslnievsvagrm
mtrrimgkasfvtlqdvggriqlyvardslpegvyndqfkkwdlgdiigargtlfktqtg
elsihctelrlltkalrplpdqevryrqryldliandksrqtfvvrskilaairqfmvar
gfmevetpmmqvipggasarpfithhnaldldmylriapelylkrlvvggfervfeinrn
frnegisvrhnpeftmmelymayadyhdlielteslfrtlaqevlgttkvtygehvfdfg
kpfekltmreaikkyrpetdmadldnfdaakalaesigitvekswglgrivteifdevae
ahliqptfiteypaevsplarrndvnpeitdrfeffiggreigngfselndaedqaerfq
eqvnakaagddeamfydedyvtaleyglpptaglgigidrmimlftnshtirdvilfpam
rp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1lylB (B:)
seqetrganeaidfndelrnrreklaalrqqgvafpndfrrdhtsdqlheefdakdnqel
eslnievsvagrmmtrrimgkasfvtlqdvggriqlyvardslpegvyndqfkkwdlgdi
igargtlfktqtgelsihctelrlltkalrplpdkfhglqdqevryrqryldliandksr
qtfvvrskilaairqfmvargfmevetpmmqvipggasarpfithhnaldldmylriape
lylkrlvvggfervfeinrnfrnegisvrhnpeftmmelymayadyhdlielteslfrtl
aqevlgttkvtygehvfdfgkpfekltmreaikkyrpetdmadldnfdaakalaesigit
vekswglgrivteifdevaeahliqptfiteypaevsplarrndvnpeitdrfeffiggr
eigngfselndaedqaerfqeqvnakaagddeamfydedyvtaleyglpptaglgigidr
mimlftnshtirdvilfpamrpqk

    Sequence, based on observed residues (ATOM records): (download) 
    >1lylB (B:)
fndelrnrreklaalrqqgvafpndfrrdhtsdqlheefdakdnqeleslnievsvagrm
mtrrimgkasfvtlqdvggriqlyvardslpegvyndqfkkwdlgdiigargtlfktqtg
elsihctelrlltkalrplpddqevryrqryldliandksrqtfvvrskilaairqfmva
rgfmevetpmmqvipggasarpfithhnaldldmylriapelylkrlvvggfervfeinr
nfrnegisvrhnpeftmmelymayadyhdlielteslfrtlaqevlgttkvtygehvfdf
gkpfekltmreaikkyrpetdmadldnfdaakalaesigitvekswglgrivteifdeva
eahliqptfiteypaevsplarrndvnpeitdrfeffiggreigngfselndaedqaerf
qeqvnakaagddeamfydedyvtaleyglpptaglgigidrmimlftnshtirdvilfpa
mrp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1lylC (C:)
seqetrganeaidfndelrnrreklaalrqqgvafpndfrrdhtsdqlheefdakdnqel
eslnievsvagrmmtrrimgkasfvtlqdvggriqlyvardslpegvyndqfkkwdlgdi
igargtlfktqtgelsihctelrlltkalrplpdkfhglqdqevryrqryldliandksr
qtfvvrskilaairqfmvargfmevetpmmqvipggasarpfithhnaldldmylriape
lylkrlvvggfervfeinrnfrnegisvrhnpeftmmelymayadyhdlielteslfrtl
aqevlgttkvtygehvfdfgkpfekltmreaikkyrpetdmadldnfdaakalaesigit
vekswglgrivteifdevaeahliqptfiteypaevsplarrndvnpeitdrfeffiggr
eigngfselndaedqaerfqeqvnakaagddeamfydedyvtaleyglpptaglgigidr
mimlftnshtirdvilfpamrpqk

    Sequence, based on observed residues (ATOM records): (download) 
    >1lylC (C:)
fndelrnrreklaalrqqgvafpndfrrdhtsdqlheefdakdnqeleslnievsvagrm
mtrrimgkasfvtlqdvggriqlyvardslpegvyndqfkkwdlgdiigargtlfktqtg
elsihctelrlltkalrplpdqevryrqryldliandksrqtfvvrskilaairqfmvar
gfmevetpmmqvipggasarpfithhnaldldmylriapelylkrlvvggfervfeinrn
frnegisvrhnpeftmmelymayadyhdlielteslfrtlaqevlgttkvtygehvfdfg
kpfekltmreaikkyrpetdmadldnfdaakalaesigitvekswglgrivteifdevae
ahliqptfiteypaevsplarrndvnpeitdrfeffiggreigngfselndaedqaerfq
eqvnakaagddeamfydedyvtaleyglpptaglgigidrmimlftnshtirdvilfpam
rp