SCOPe 2.04: Protein: Concanavalin A

Lineage for Protein: Concanavalin A

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
sandwich; 12-14 strands in 2 sheets; complex topology
Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families)
Family b.29.1.1: Legume lectins [49900] (5 proteins)
Protein Concanavalin A [49901] (4 species)
natural circle permutation: the "old" N- and C-termini are linked with a peptide bond, whereas the "new" ones correspond to a cleaved loop

Species:

Brazilian jackbean (Canavalia brasiliensis) [TaxId:61861] [49903] (3 PDB entries)
1. Domains for 1azd:
  1. Domain d1azda_: 1azd A: [24020]
    complexed with ca, mn
  2. Domain d1azdb_: 1azd B: [24021]
    complexed with ca, mn
  3. Domain d1azdc_: 1azd C: [24022]
    complexed with ca, mn
  4. Domain d1azdd_: 1azd D: [24023]
    complexed with ca, mn
2. Domain for 3ju9:
  - Domain d3ju9a_: 3ju9 A: [178830]
    automated match to d1azda_
    complexed with ca, cl, dbb, gol, mn
3. Domain for 4h55:
  - Domain d4h55a_: 4h55 A: [194405]
    automated match to d3ju9a_
    complexed with bdr, ca, dbb, mn
Canavalia cathartica [TaxId:28958] [224859] (1 PDB entry)
- Domains for 3qlq:
  1. Domain d3qlqa_: 3qlq A: [200361]
    automated match to d1nlsa_
    complexed with ca, man, mn
  2. Domain d3qlqb_: 3qlq B: [200362]
    automated match to d1nlsa_
    complexed with ca, man, mn
  3. Domain d3qlqd_: 3qlq D: [200363]
    automated match to d1nlsa_
    complexed with ca, man, mn
Canavalia virosa [TaxId:28958] [186936] (3 PDB entries)
1. Domain for 2a7a:
  - Domain d2a7aa_: 2a7a A: [126332]
    automated match to d1apna_
    complexed with ca, mn, xe
2. Domain for 2g4i:
  - Domain d2g4ia_: 2g4i A: [134595]
    automated match to d1apna_
    complexed with ca, cl, mn, na
3. Domain for 3qlq:
  - Domain d3qlqc_: 3qlq C: [196058]
    automated match to d2a7aa_
    complexed with ca, man, mn
Jack bean (Canavalia ensiformis) [TaxId:3823] [49902] (56 PDB entries)
Uniprot P81461
1. Domains for 1apn:
  1. Domain d1apna_: 1apn A: [23961]
    demetallized, pH 5
  2. Domain d1apnb_: 1apn B: [23962]
    demetallized, pH 5
2. Domains for 1bxh:
  1. Domain d1bxha_: 1bxh A: [23989]
    complexed with ca, mma, mn
  2. Domain d1bxhb_: 1bxh B: [23990]
    complexed with ca, mma, mn
  3. Domain d1bxhc_: 1bxh C: [23991]
    complexed with ca, mma, mn
  4. Domain d1bxhd_: 1bxh D: [23992]
    complexed with ca, mma, mn
3. Domain for 1c57:
  - Domain d1c57a_: 1c57 A: [23997]
    complexed with ca, mn
4. Domains for 1ces:
  1. Domain d1cesa_: 1ces A: [24006]
    complexed with zn
  2. Domain d1cesb_: 1ces B: [24007]
    complexed with zn
5. Domains for 1cjp:
  1. Domain d1cjpa_: 1cjp A: [23998]
    complexed with ca, mn, mug
  2. Domain d1cjpb_: 1cjp B: [23999]
    complexed with ca, mn, mug
  3. Domain d1cjpc_: 1cjp C: [24000]
    complexed with ca, mn, mug
  4. Domain d1cjpd_: 1cjp D: [24001]
    complexed with ca, mn, mug
6. Domains for 1cn1:
  1. Domain d1cn1a_: 1cn1 A: [24018]
  2. Domain d1cn1b_: 1cn1 B: [24019]
7. Domain for 1con:
  - Domain d1cona_: 1con A: [23945]
    complexed with ca, cd
8. Domains for 1cvn:
  1. Domain d1cvna_: 1cvn A: [23955]
    complexed with ca, mn
  2. Domain d1cvnb_: 1cvn B: [23956]
    complexed with ca, mn
  3. Domain d1cvnc_: 1cvn C: [23957]
    complexed with ca, mn
  4. Domain d1cvnd_: 1cvn D: [23958]
    complexed with ca, mn
9. Domain for 1dq0:
  - Domain d1dq0a_: 1dq0 A: [23933]
10. Domain for 1dq1:
  - Domain d1dq1a_: 1dq1 A: [23951]
    complexed with ca
11. Domains for 1dq2:
  1. Domain d1dq2a_: 1dq2 A: [23952]
    complexed with acy
  2. Domain d1dq2b_: 1dq2 B: [23953]
    complexed with acy
12. Domains for 1dq4:
  1. Domain d1dq4a_: 1dq4 A: [24011]
    complexed with mn
  2. Domain d1dq4b_: 1dq4 B: [24012]
    complexed with mn
13. Domain for 1dq5:
  - Domain d1dq5a_: 1dq5 A: [23946]
    complexed with mn
14. Domain for 1dq6:
  - Domain d1dq6a_: 1dq6 A: [23937]
    complexed with mn
15. Domains for 1enq:
  1. Domain d1enqa_: 1enq A: [23975]
    complexed with zn
  2. Domain d1enqb_: 1enq B: [23976]
    complexed with zn
  3. Domain d1enqc_: 1enq C: [23977]
    complexed with zn
  4. Domain d1enqd_: 1enq D: [23978]
    complexed with zn
16. Domain for 1enr:
  - Domain d1enra_: 1enr A: [23935]
    complexed with ca, zn
17. Domains for 1ens:
  1. Domain d1ensa_: 1ens A: [24008]
    complexed with co
  2. Domain d1ensb_: 1ens B: [24009]
    complexed with co
18. Domains for 1gic:
  1. Domain d1gica_: 1gic A: [23939]
    complexed with ca, gyp, mn
  2. Domain d1gicb_: 1gic B: [23940]
    complexed with ca, gyp, mn
19. Domains for 1gkb:
  1. Domain d1gkba_: 1gkb A: [60584]
    complexed with ca, mg, mn
  2. Domain d1gkbb_: 1gkb B: [60585]
    complexed with ca, mg, mn
20. Domain for 1hqw:
  - Domain d1hqwa_: 1hqw A: [90659]
    complexed with a tripeptide ypy, chain B
    complexed with ca, mn, ptd
21. Domain for 1i3h:
  - Domain d1i3ha_: 1i3h A: [61592]
    complexed with dimannose
    complexed with ca, mn
22. Domain for 1jbc:
  - Domain d1jbca_: 1jbc A: [23929]
    complexed with ca, mn
23. Domain for 1jn2:
  - Domain d1jn2p_: 1jn2 P: [84178]
    complexed with ca, mn, sfp
24. Domains for 1joj:
  1. Domain d1joja_: 1joj A: [66994]
    complexed with a hexapeptide
    complexed with ca, mn
  2. Domain d1jojb_: 1joj B: [66995]
    complexed with a hexapeptide
    complexed with ca, mn
  3. Domain d1jojc_: 1joj C: [66996]
    complexed with a hexapeptide
    complexed with ca, mn
  4. Domain d1jojd_: 1joj D: [66997]
    complexed with a hexapeptide
    complexed with ca, mn
25. Domains for 1jui:
  1. Domain d1juia_: 1jui A: [71888]
    complexed with a 10-mer peptide
    complexed with ca, mn
  2. Domain d1juib_: 1jui B: [71889]
    complexed with a 10-mer peptide
    complexed with ca, mn
  3. Domain d1juic_: 1jui C: [71890]
    complexed with a 10-mer peptide
    complexed with ca, mn
  4. Domain d1juid_: 1jui D: [71891]
    complexed with a 10-mer peptide
    complexed with ca, mn
26. Domain for 1jw6:
  - Domain d1jw6a_: 1jw6 A: [63309]
    complexed with a hexapeptide
    complexed with ca, ipa, mn, ptd
27. Domains for 1jyc:
  1. Domain d1jyca_: 1jyc A: [77208]
    complexed with a carbohydrate-mimicking 15-mer peptide
    complexed with ca, mn
  2. Domain d1jycb_: 1jyc B: [77209]
    complexed with a carbohydrate-mimicking 15-mer peptide
    complexed with ca, mn
  3. Domain d1jycc_: 1jyc C: [77210]
    complexed with a carbohydrate-mimicking 15-mer peptide
    complexed with ca, mn
  4. Domain d1jycd_: 1jyc D: [77211]
    complexed with a carbohydrate-mimicking 15-mer peptide
    complexed with ca, mn
28. Domains for 1jyi:
  1. Domain d1jyia_: 1jyi A: [77212]
    complexed with a carbohydrate-mimicking 12-mer peptide
    complexed with ca, mn
  2. Domain d1jyib_: 1jyi B: [77213]
    complexed with a carbohydrate-mimicking 12-mer peptide
    complexed with ca, mn
  3. Domain d1jyic_: 1jyi C: [77214]
    complexed with a carbohydrate-mimicking 12-mer peptide
    complexed with ca, mn
  4. Domain d1jyid_: 1jyi D: [77215]
    complexed with a carbohydrate-mimicking 12-mer peptide
    complexed with ca, mn
29. Domain for 1nls:
  - Domain d1nlsa_: 1nls A: [23928]
    complexed with ca, mn
30. Domains for 1nxd:
  1. Domain d1nxd1_: 1nxd 1: [92294]
    complexed with azi, gol, mn, na
  2. Domain d1nxd2_: 1nxd 2: [92295]
    complexed with azi, gol, mn, na
  3. Domain d1nxd3_: 1nxd 3: [92296]
    complexed with azi, gol, mn, na
  4. Domain d1nxd4_: 1nxd 4: [92297]
    complexed with azi, gol, mn, na
31. Domains for 1ona:
  1. Domain d1onaa_: 1ona A: [23971]
    complexed with ca, mn
  2. Domain d1onab_: 1ona B: [23972]
    complexed with ca, mn
  3. Domain d1onac_: 1ona C: [23973]
    complexed with ca, mn
  4. Domain d1onad_: 1ona D: [23974]
    complexed with ca, mn
32. Domains for 1qdc:
  1. Domain d1qdca_: 1qdc A: [23941]
    complexed with ca, cl, mn
  2. Domain d1qdcb_: 1qdc B: [23942]
    complexed with ca, cl, mn
  3. Domain d1qdcc_: 1qdc C: [23943]
    complexed with ca, cl, mn
  4. Domain d1qdcd_: 1qdc D: [23944]
    complexed with ca, cl, mn
33. Domains for 1qdo:
  1. Domain d1qdoa_: 1qdo A: [23993]
    complexed with ca, mn
  2. Domain d1qdob_: 1qdo B: [23994]
    complexed with ca, mn
  3. Domain d1qdoc_: 1qdo C: [23995]
    complexed with ca, mn
  4. Domain d1qdod_: 1qdo D: [23996]
    complexed with ca, mn
34. Domains for 1qgl:
  1. Domain d1qgla_: 1qgl A: [23959]
    complexed with ca, ejt, mn, sin
  2. Domain d1qglb_: 1qgl B: [23960]
    complexed with ca, ejt, mn, sin
35. Domain for 1qny:
  - Domain d1qnya_: 1qny A: [23934]
    complexed with ca, mn
36. Domain for 1scr:
  - Domain d1scra_: 1scr A: [23938]
    complexed with ca, ni
37. Domain for 1scs:
  - Domain d1scsa_: 1scs A: [23930]
    complexed with ca, co
38. Domains for 1tei:
  1. Domain d1teia_: 1tei A: [23979]
    complexed with ca, mn
  2. Domain d1teib_: 1tei B: [23980]
    complexed with ca, mn
  3. Domain d1teic_: 1tei C: [23981]
    complexed with ca, mn
  4. Domain d1teid_: 1tei D: [23982]
    complexed with ca, mn
  5. Domain d1teie_: 1tei E: [23983]
    complexed with ca, mn
  6. Domain d1teif_: 1tei F: [23984]
    complexed with ca, mn
  7. Domain d1teig_: 1tei G: [23985]
    complexed with ca, mn
  8. Domain d1teih_: 1tei H: [23986]
    complexed with ca, mn
39. Domains for 1val:
  1. Domain d1vala_: 1val A: [24013]
    complexed with ca, mn, png
  2. Domain d1valb_: 1val B: [24014]
    complexed with ca, mn, png
  3. Domain d1valc_: 1val C: [24015]
    complexed with ca, mn, png
  4. Domain d1vald_: 1val D: [24016]
    complexed with ca, mn, png
40. Domains for 1vam:
  1. Domain d1vama_: 1vam A: [24002]
    complexed with ca, mn, pna
  2. Domain d1vamb_: 1vam B: [24003]
    complexed with ca, mn, pna
  3. Domain d1vamc_: 1vam C: [24004]
    complexed with ca, mn, pna
  4. Domain d1vamd_: 1vam D: [24005]
    complexed with ca, mn, pna
41. Domains for 1vln:
  1. Domain d1vlna_: 1vln A: [23963]
    complexed with ca, mn
  2. Domain d1vlnb_: 1vln B: [23964]
    complexed with ca, mn
  3. Domain d1vlnc_: 1vln C: [23965]
    complexed with ca, mn
  4. Domain d1vlnd_: 1vln D: [23966]
    complexed with ca, mn
  5. Domain d1vlne_: 1vln E: [23967]
    complexed with ca, mn
  6. Domain d1vlnf_: 1vln F: [23968]
    complexed with ca, mn
  7. Domain d1vlng_: 1vln G: [23969]
    complexed with ca, mn
  8. Domain d1vlnh_: 1vln H: [23970]
    complexed with ca, mn
42. Domain for 1xqn:
  - Domain d1xqna_: 1xqn A: [115852]
    complexed with ca, mn
43. Domain for 2cna:
  - Domain d2cnaa_: 2cna A: [24010]
    complexed with ca, mn
44. Domain for 2ctv:
  - Domain d2ctva_: 2ctv A: [23936]
    complexed with ca, mn
45. Domain for 2enr:
  - Domain d2enra_: 2enr A: [23954]
    complexed with cd
46. Domain for 2uu8:
  - Domain d2uu8a_: 2uu8 A: [152180]
    automated match to d1apna_
    complexed with ca, ni
47. Domain for 2yz4:
  - Domain d2yz4a_: 2yz4 A: [153837]
    automated match to d1apna_
    complexed with ca, dod, mn
48. Domain for 3cna:
  - Domain d3cnaa_: 3cna A: [24017]
    complexed with ca, mn
49. Domains for 3d4k:
  1. Domain d3d4ka_: 3d4k A: [173677]
    automated match to d1apna_
    complexed with ca, gol, h1m, man, mn
  2. Domain d3d4kb_: 3d4k B: [173678]
    automated match to d1apna_
    complexed with ca, gol, h1m, man, mn
  3. Domain d3d4kc_: 3d4k C: [173679]
    automated match to d1apna_
    complexed with ca, gol, h1m, man, mn
  4. Domain d3d4kd_: 3d4k D: [173680]
    automated match to d1apna_
    complexed with ca, gol, h1m, man, mn
50. Domains for 3enr:
  1. Domain d3enra_: 3enr A: [23987]
    Zinc-calcium substituted
    complexed with ca, zn
  2. Domain d3enrb_: 3enr B: [23988]
    Zinc-calcium substituted
    complexed with ca, zn
51. Domains for 3nwk:
  1. Domain d3nwka_: 3nwk A: [214061]
    automated match to d1nlsa_
    complexed with ca, gol, mn
  2. Domain d3nwkb_: 3nwk B: [214062]
    automated match to d1nlsa_
    complexed with ca, gol, mn
  3. Domain d3nwkc_: 3nwk C: [214063]
    automated match to d1nlsa_
    complexed with ca, gol, mn
  4. Domain d3nwkd_: 3nwk D: [214064]
    automated match to d1nlsa_
    complexed with ca, gol, mn
52. Domains for 4p9w:
  1. Domain d4p9wa_: 4p9w A: [259246]
    automated match to d1nlsa_
    complexed with ca, mn, r3m
  2. Domain d4p9wb_: 4p9w B: [259249]
    automated match to d1nlsa_
    complexed with ca, mn, r3m
  3. Domain d4p9wc_: 4p9w C: [259250]
    automated match to d1nlsa_
    complexed with ca, mn, r3m
  4. Domain d4p9wd_: 4p9w D: [259252]
    automated match to d1nlsa_
    complexed with ca, mn, r3m
53. Domains for 4p9x:
  1. Domain d4p9xa_: 4p9x A: [259268]
    automated match to d1nlsa_
    complexed with ca, mn, r3g
  2. Domain d4p9xb_: 4p9x B: [259262]
    automated match to d1nlsa_
    complexed with ca, mn, r3g
  3. Domain d4p9xc_: 4p9x C: [259263]
    automated match to d1nlsa_
    complexed with ca, mn, r3g
  4. Domain d4p9xd_: 4p9x D: [259264]
    automated match to d1nlsa_
    complexed with ca, mn, r3g
54. Domains for 4p9y:
  1. Domain d4p9ya_: 4p9y A: [259248]
    automated match to d1nlsa_
    complexed with 2ko, ca, mn
  2. Domain d4p9yb_: 4p9y B: [259247]
    automated match to d1nlsa_
    complexed with 2ko, ca, mn
55. Domains for 4pf5:
  1. Domain d4pf5a_: 4pf5 A: [261890]
    automated match to d1nlsa_
    complexed with edo, m3n, mn
  2. Domain d4pf5b_: 4pf5 B: [261887]
    automated match to d1nlsa_
    complexed with edo, m3n, mn
56. Domains for 5cna:
  1. Domain d5cnaa_: 5cna A: [23947]
    complexed with ca, cl, mma, mn
  2. Domain d5cnab_: 5cna B: [23948]
    complexed with ca, cl, mma, mn
  3. Domain d5cnac_: 5cna C: [23949]
    complexed with ca, cl, mma, mn
  4. Domain d5cnad_: 5cna D: [23950]
    complexed with ca, cl, mma, mn

More info for Protein Concanavalin A from b.29.1.1: Legume lectins

Timeline for Protein Concanavalin A from b.29.1.1: Legume lectins:

Protein Concanavalin A from b.29.1.1: Legume lectins first appeared (with stable ids) in SCOP 1.55
Protein Concanavalin A from b.29.1.1: Legume lectins appears in SCOPe 2.03
Protein Concanavalin A from b.29.1.1: Legume lectins appears in SCOPe 2.05
Protein Concanavalin A from b.29.1.1: Legume lectins appears in the current release, SCOPe 2.08