Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.116: alpha/beta knot [75216] (1 superfamily) core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot |
Superfamily c.116.1: alpha/beta knot [75217] (9 families) known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily all known members have dimeric structures |
Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins) fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain |
Protein automated matches [196235] (4 species) not a true protein |
Species Pseudomonas aeruginosa [TaxId:208963] [343276] (7 PDB entries) |
Domain d5wyqa1: 5wyq A:5-250 [343350] Other proteins in same PDB: d5wyqa2, d5wyqb2 automated match to d1p9pa_ complexed with sam |
Domain d5wyqb1: 5wyq B:5-250 [343364] Other proteins in same PDB: d5wyqa2, d5wyqb2 automated match to d1p9pa_ complexed with sam |
Domain d5wyra1: 5wyr A:5-250 [343277] Other proteins in same PDB: d5wyra2, d5wyrb2 automated match to d1p9pa_ complexed with sfg |
Domain d5wyrb1: 5wyr B:5-250 [343344] Other proteins in same PDB: d5wyra2, d5wyrb2 automated match to d1p9pa_ complexed with sfg |
Domain d5zhma1: 5zhm A:5-250 [365706] Other proteins in same PDB: d5zhma2, d5zhmb2 automated match to d1p9pa_ protein/RNA complex; complexed with 9d3, sam |
Domain d5zhmb1: 5zhm B:5-250 [365690] Other proteins in same PDB: d5zhma2, d5zhmb2 automated match to d1p9pa_ protein/RNA complex; complexed with 9d3, sam |
Domain d5zhna1: 5zhn A:5-249 [366973] Other proteins in same PDB: d5zhna2, d5zhnb2 automated match to d1p9pa_ protein/RNA complex; complexed with 9d0 |
Domain d5zhnb1: 5zhn B:5-250 [366986] Other proteins in same PDB: d5zhna2, d5zhnb2 automated match to d1p9pa_ protein/RNA complex; complexed with 9d0 |
Domain d6afka1: 6afk A:5-250 [372812] Other proteins in same PDB: d6afka2, d6afkb2 automated match to d1p9pa_ protein/RNA complex; complexed with 9wo, sam |
Domain d6afkb1: 6afk B:5-250 [372811] Other proteins in same PDB: d6afka2, d6afkb2 automated match to d1p9pa_ protein/RNA complex; complexed with 9wo, sam |
Domain d6jkia1: 6jki A:5-250 [370505] Other proteins in same PDB: d6jkia2, d6jkib2 automated match to d1p9pa_ complexed with gol, mn, na, peg, sfg |
Domain d6jkib1: 6jki B:5-250 [370476] Other proteins in same PDB: d6jkia2, d6jkib2 automated match to d1p9pa_ complexed with gol, mn, na, peg, sfg |
Domain d6joea1: 6joe A:5-250 [373600] Other proteins in same PDB: d6joea2, d6joeb2 automated match to d1p9pa_ protein/RNA complex; complexed with bwr, po4, sam |
Domain d6joeb1: 6joe B:5-250 [373596] Other proteins in same PDB: d6joea2, d6joeb2 automated match to d1p9pa_ protein/RNA complex; complexed with bwr, po4, sam |
Timeline for Species Pseudomonas aeruginosa [TaxId:208963] from c.116.1.4 automated matches: