PDB entry 6joe

View 6joe on RCSB PDB site
Description: Crystal structure of TrmD from Pseudomonas aeruginosa in complex with active-site inhibitor
Class: transferase
Keywords: tRNA methyltransferase, TRANSFERASE
Deposited on 2019-03-20, released 2019-09-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-09-25, with a file datestamp of 2019-09-20.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa UCBPP-PA14 [TaxId:208963]
    Gene: trmD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (23-268)
      • expression tag (21-22)
    Domains in SCOPe 2.08: d6joea1, d6joea2
  • Chain 'B':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa UCBPP-PA14 [TaxId:208963]
    Gene: trmD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (23-268)
      • expression tag (20-22)
    Domains in SCOPe 2.08: d6joeb1, d6joeb2
  • Heterogens: BWR, PO4, SAM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6joeA (A:)
    mhhhhhhssgvdlgtenlyfqsmlwvgvvsifpemfraisdygitsravkqglltltcwn
    prvytedrhqtvddrpfgggpgmvmkikplegaladarqaaggrkakviylspqgrqltq
    agvrelaeeealiliagryegiderfieehvdeewsigdyvlsggelpamvlvdavtrll
    pgalghadsaeedsftdglldcphytrpevyadkrvpevllsgnhehirrwrlqqalgrt
    werradlldsrslsgeeqkllaeyirqrd
    

    Sequence, based on observed residues (ATOM records): (download)
    >6joeA (A:)
    smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
    gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
    iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgaleedsftdglldcphytr
    pevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaeyirq
    rd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6joeB (B:)
    mhhhhhhssgvdlgtenlyfqsmlwvgvvsifpemfraisdygitsravkqglltltcwn
    prvytedrhqtvddrpfgggpgmvmkikplegaladarqaaggrkakviylspqgrqltq
    agvrelaeeealiliagryegiderfieehvdeewsigdyvlsggelpamvlvdavtrll
    pgalghadsaeedsftdglldcphytrpevyadkrvpevllsgnhehirrwrlqqalgrt
    werradlldsrslsgeeqkllaeyirqrd
    

    Sequence, based on observed residues (ATOM records): (download)
    >6joeB (B:)
    qsmlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfggg
    pgmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagrye
    giderfieehvdeewsigdyvlsggelpamvlvdavtrllpgaldglldcphytrpevya
    dkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaeyirqrd