PDB entry 6jki

View 6jki on RCSB PDB site
Description: Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa
Class: transferase
Keywords: tRNA (guanine-N(1)-)-methyltransferase, TrmD, Pseudomonas aerugiona, TRANSFERASE
Deposited on 2019-03-01, released 2019-07-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-30, with a file datestamp of 2019-10-25.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa [TaxId:208963]
    Gene: trmD, PA14_15990
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d6jkia1, d6jkia2
  • Chain 'B':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa [TaxId:208963]
    Gene: trmD, PA14_15990
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d6jkib1, d6jkib2
  • Heterogens: SFG, MN, GOL, NA, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6jkiA (A:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgalghadsaeedsftdglld
cphytrpevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkll
aeyirqrdds

    Sequence, based on observed residues (ATOM records): (download) 
    >6jkiA (A:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgaledsftdglldcphytrp
evyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaeyirqr
d

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6jkiB (B:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgalghadsaeedsftdglld
cphytrpevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkll
aeyirqrdds

    Sequence, based on observed residues (ATOM records): (download) 
    >6jkiB (B:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgalsaeedsftdglldcphy
trpevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaeyi
rqrd