Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.116: alpha/beta knot [75216] (1 superfamily) core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot |
Superfamily c.116.1: alpha/beta knot [75217] (9 families) known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily all known members have dimeric structures |
Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins) fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain |
Protein automated matches [196235] (4 species) not a true protein |
Species Pseudomonas aeruginosa [TaxId:208963] [343276] (7 PDB entries) |
Domain d5zhna1: 5zhn A:5-249 [366973] Other proteins in same PDB: d5zhna2, d5zhnb2 automated match to d1p9pa_ protein/RNA complex; complexed with 9d0 |
PDB Entry: 5zhn (more details), 2.65 Å
SCOPe Domain Sequences for d5zhna1:
Sequence, based on SEQRES records: (download)
>d5zhna1 c.116.1.4 (A:5-249) automated matches {Pseudomonas aeruginosa [TaxId: 208963]} lwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggpgm vmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryegid erfieehvdeewsigdyvlsggelpamvlvdavtrllpgalghadsaeedsftdglldcp hytrpevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllae yirqr
>d5zhna1 c.116.1.4 (A:5-249) automated matches {Pseudomonas aeruginosa [TaxId: 208963]} lwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggpgm vmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryegid erfieehvdeewsigdyvlsggelpamvlvdavtrllpgaltdglldcphytrpevyadk rvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaeyirqr
Timeline for d5zhna1: