Lineage for Species: Pseudomonas aeruginosa [TaxId: 208963]

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2528466Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2528467Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2528542Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 2528555Protein automated matches [196235] (4 species)
    not a true protein
  7. 2528604Species Pseudomonas aeruginosa [TaxId:208963] [343276] (7 PDB entries)

PDB entries in Species: Pseudomonas aeruginosa [TaxId: 208963]:

  1. Domain(s) for 5wyq:
    1. 2528605Domain d5wyqa1: 5wyq A:5-250 [343350]
      Other proteins in same PDB: d5wyqa2, d5wyqb2
      automated match to d1p9pa_
      complexed with sam
    2. 2528606Domain d5wyqb1: 5wyq B:5-250 [343364]
      Other proteins in same PDB: d5wyqa2, d5wyqb2
      automated match to d1p9pa_
      complexed with sam
  2. Domain(s) for 5wyr:
    1. 2528609Domain d5wyra1: 5wyr A:5-250 [343277]
      Other proteins in same PDB: d5wyra2, d5wyrb2
      automated match to d1p9pa_
      complexed with sfg
    2. 2528610Domain d5wyrb1: 5wyr B:5-250 [343344]
      Other proteins in same PDB: d5wyra2, d5wyrb2
      automated match to d1p9pa_
      complexed with sfg
  3. Domain(s) for 5zhm:
    1. 2528617Domain d5zhma1: 5zhm A:5-250 [365706]
      Other proteins in same PDB: d5zhma2, d5zhmb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with 9d3, sam
    2. 2528618Domain d5zhmb1: 5zhm B:5-250 [365690]
      Other proteins in same PDB: d5zhma2, d5zhmb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with 9d3, sam
  4. Domain(s) for 5zhn:
    1. 2528613Domain d5zhna1: 5zhn A:5-249 [366973]
      Other proteins in same PDB: d5zhna2, d5zhnb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with 9d0
    2. 2528614Domain d5zhnb1: 5zhn B:5-250 [366986]
      Other proteins in same PDB: d5zhna2, d5zhnb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with 9d0
  5. Domain(s) for 6afk:
    1. 2528615Domain d6afka1: 6afk A:5-250 [372812]
      Other proteins in same PDB: d6afka2, d6afkb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with 9wo, sam
    2. 2528616Domain d6afkb1: 6afk B:5-250 [372811]
      Other proteins in same PDB: d6afka2, d6afkb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with 9wo, sam
  6. Domain(s) for 6jki:
    1. 2528611Domain d6jkia1: 6jki A:5-250 [370505]
      Other proteins in same PDB: d6jkia2, d6jkib2
      automated match to d1p9pa_
      complexed with gol, mn, na, peg, sfg
    2. 2528612Domain d6jkib1: 6jki B:5-250 [370476]
      Other proteins in same PDB: d6jkia2, d6jkib2
      automated match to d1p9pa_
      complexed with gol, mn, na, peg, sfg
  7. Domain(s) for 6joe:
    1. 2528607Domain d6joea1: 6joe A:5-250 [373600]
      Other proteins in same PDB: d6joea2, d6joeb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with bwr, po4, sam
    2. 2528608Domain d6joeb1: 6joe B:5-250 [373596]
      Other proteins in same PDB: d6joea2, d6joeb2
      automated match to d1p9pa_
      protein/RNA complex; complexed with bwr, po4, sam

More info for Species Pseudomonas aeruginosa [TaxId:208963] from c.116.1.4 automated matches

Timeline for Species Pseudomonas aeruginosa [TaxId:208963] from c.116.1.4 automated matches: