SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.7: LysM domain [54105] (1 superfamily)
beta-alpha(2)-beta; antiparallel strands
Superfamily d.7.1: LysM domain [54106] (2 families)
automatically mapped to Pfam PF01476
Family d.7.1.0: automated matches [234000] (1 protein)
not a true family
Protein automated matches [234001] (5 species)
not a true protein

Species:

Bacillus subtilis [TaxId:1423] [234002] (3 PDB entries)

Domains for 4a1i:

Domain d4a1ia1: 4a1i A:1-48 [234003]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domain d4a1ib1: 4a1i B:1-48 [234007]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domain d4a1ic1: 4a1i C:1-48 [234019]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domain d4a1id1: 4a1i D:1-48 [234021]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domain d4a1ie1: 4a1i E:1-48 [234011]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domain d4a1if1: 4a1i F:1-48 [234009]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domain d4a1ig1: 4a1i G:1-48 [234012]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domain d4a1ih1: 4a1i H:1-48 [234017]
Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
automated match to d1y7ma2
complexed with cd, cl, so4

Domains for 4a1j:
1. Domain d4a1ja1: 4a1j A:1-48 [234015]
  Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
  automated match to d1y7ma2
  complexed with so4
2. Domain d4a1jb1: 4a1j B:1-48 [234025]
  Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
  automated match to d1y7ma2
  complexed with so4
Domain for 4a1k:
- Domain d4a1ka1: 4a1k A:1-48 [234023]
  Other proteins in same PDB: d4a1ka2, d4a1ka3
  automated match to d1y7ma2
  complexed with so4

Bacillus subtilis [TaxId:224308] [256165] (2 PDB entries)
1. Domain for 3zqd:
  - Domain d3zqda1: 3zqd A:5-51 [250817]
    Other proteins in same PDB: d3zqda2, d3zqda3, d3zqda4
    automated match to d1y7ma2
2. Domain for 4a52:
  - Domain d4a52a1: 4a52 A:5-51 [250926]
    Other proteins in same PDB: d4a52a2, d4a52a3, d4a52a4
    automated match to d1y7ma2
    complexed with im2
Pteris ryukyuensis [TaxId:367335] [346349] (1 PDB entry)
- Domains for 4pxv:
  1. Domain d4pxva_: 4pxv A: [345408]
    automated match to d5k2la_
    complexed with zn
  2. Domain d4pxvb_: 4pxv B: [345409]
    automated match to d5k2la_
    complexed with zn
  3. Domain d4pxvc_: 4pxv C: [345410]
    automated match to d5k2la_
    complexed with zn
  4. Domain d4pxvd_: 4pxv D: [345411]
    automated match to d5k2la_
    complexed with zn
Thermus thermophilus [TaxId:300852] [268982] (2 PDB entries)
1. Domains for 4uz2:
  1. Domain d4uz2a1: 4uz2 A:16-62 [309764]
    automated match to d4uz3c_
  2. Domain d4uz2a2: 4uz2 A:63-114 [309765]
    automated match to d4uz3c_
  3. Domain d4uz2b1: 4uz2 B:15-62 [309766]
    automated match to d4uz3c_
  4. Domain d4uz2b2: 4uz2 B:63-114 [309767]
    automated match to d4uz3c_
  5. Domain d4uz2c1: 4uz2 C:16-62 [309768]
    automated match to d4uz3c_
  6. Domain d4uz2c2: 4uz2 C:63-113 [309769]
    automated match to d4uz3c_
  7. Domain d4uz2d1: 4uz2 D:16-62 [309770]
    automated match to d4uz3c_
  8. Domain d4uz2d2: 4uz2 D:63-111 [309771]
    automated match to d4uz3c_
2. Domains for 4uz3:
  1. Domain d4uz3a1: 4uz3 A:16-62 [301044]
    automated match to d4uz3c_
    complexed with dio, so4
  2. Domain d4uz3a2: 4uz3 A:63-114 [301045]
    automated match to d4uz3c_
    complexed with dio, so4
  3. Domain d4uz3b1: 4uz3 B:17-62 [301046]
    automated match to d4uz3c_
    complexed with dio, so4
  4. Domain d4uz3b2: 4uz3 B:63-110 [301047]
    automated match to d4uz3c_
    complexed with dio, so4
  5. Domain d4uz3c_: 4uz3 C: [268983]
    automated match to d1e0ga_
    complexed with dio, so4
Volvox carteri [TaxId:3068] [330095] (1 PDB entry)
- Domain for 5k2l:
  - Domain d5k2la_: 5k2l A: [330096]
    automated match to d4uz3c_
    complexed with edo

More info for Protein automated matches from d.7.1.0: automated matches

Timeline for Protein automated matches from d.7.1.0: automated matches:

Protein automated matches from d.7.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.7.1.0: automated matches appears in SCOPe 2.06