Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2928808Fold d.7: LysM domain [54105] (1 superfamily)
    beta-alpha(2)-beta; antiparallel strands
  4. 2928809Superfamily d.7.1: LysM domain [54106] (2 families) (S)
    automatically mapped to Pfam PF01476
  5. 2928818Family d.7.1.0: automated matches [234000] (1 protein)
    not a true family
  6. 2928819Protein automated matches [234001] (7 species)
    not a true protein

Species:

  1. 2928820Bacillus subtilis [TaxId:1423] [234002] (3 PDB entries)
    1. Domains for 4a1i:
      1. 2928821Domain d4a1ia1: 4a1i A:1-48 [234003]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      2. 2928822Domain d4a1ib1: 4a1i B:1-48 [234007]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      3. 2928823Domain d4a1ic1: 4a1i C:1-48 [234019]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      4. 2928824Domain d4a1id1: 4a1i D:1-48 [234021]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      5. 2928825Domain d4a1ie1: 4a1i E:1-48 [234011]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      6. 2928826Domain d4a1if1: 4a1i F:1-48 [234009]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      7. 2928827Domain d4a1ig1: 4a1i G:1-48 [234012]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      8. 2928828Domain d4a1ih1: 4a1i H:1-48 [234017]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
    2. Domains for 4a1j:
      1. 2928830Domain d4a1ja1: 4a1j A:1-48 [234015]
        Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
        automated match to d1y7ma2
        complexed with so4
      2. 2928831Domain d4a1jb1: 4a1j B:1-48 [234025]
        Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
        automated match to d1y7ma2
        complexed with so4
    3. Domain for 4a1k:
  2. 2928832Bacillus subtilis [TaxId:224308] [256165] (2 PDB entries)
    1. Domain for 3zqd:
    2. Domain for 4a52:
  3. 2928835Enterococcus faecalis [TaxId:226185] [419820] (1 PDB entry)
  4. 2928837Equisetum arvense [TaxId:3258] [380621] (1 PDB entry)
  5. 2928840Pteris ryukyuensis [TaxId:367335] [346349] (2 PDB entries)
    1. Domains for 4pxv:
      1. 2928845Domain d4pxva_: 4pxv A: [345408]
        automated match to d5k2la_
        complexed with zn
      2. 2928846Domain d4pxvb_: 4pxv B: [345409]
        automated match to d5k2la_
        complexed with zn
      3. 2928847Domain d4pxvc_: 4pxv C: [345410]
        automated match to d5k2la_
        complexed with zn
      4. 2928848Domain d4pxvd_: 4pxv D: [345411]
        automated match to d5k2la_
        complexed with zn
    2. Domains for 5ylg:
      1. 2928841Domain d5ylga_: 5ylg A: [359388]
        automated match to d4pxvc_
        complexed with edo, zn
      2. 2928842Domain d5ylgb_: 5ylg B: [359362]
        automated match to d4pxvc_
        complexed with edo, zn
      3. 2928843Domain d5ylgc_: 5ylg C: [359361]
        automated match to d4pxvc_
        complexed with edo, zn
      4. 2928844Domain d5ylgd_: 5ylg D: [359380]
        automated match to d4pxvc_
        complexed with edo, zn
  6. 2928849Thermus thermophilus [TaxId:300852] [268982] (2 PDB entries)
    1. Domains for 4uz2:
      1. 2928855Domain d4uz2a1: 4uz2 A:16-62 [309764]
        automated match to d4uz3c_
      2. 2928856Domain d4uz2a2: 4uz2 A:63-114 [309765]
        automated match to d4uz3c_
      3. 2928857Domain d4uz2b1: 4uz2 B:15-62 [309766]
        automated match to d4uz3c_
      4. 2928858Domain d4uz2b2: 4uz2 B:63-114 [309767]
        automated match to d4uz3c_
      5. 2928859Domain d4uz2c1: 4uz2 C:16-62 [309768]
        automated match to d4uz3c_
      6. 2928860Domain d4uz2c2: 4uz2 C:63-113 [309769]
        automated match to d4uz3c_
      7. 2928861Domain d4uz2d1: 4uz2 D:16-62 [309770]
        automated match to d4uz3c_
      8. 2928862Domain d4uz2d2: 4uz2 D:63-111 [309771]
        automated match to d4uz3c_
    2. Domains for 4uz3:
      1. 2928850Domain d4uz3a1: 4uz3 A:16-62 [301044]
        automated match to d4uz3c_
        complexed with dio, ndg, so4
      2. 2928851Domain d4uz3a2: 4uz3 A:63-114 [301045]
        automated match to d4uz3c_
        complexed with dio, ndg, so4
      3. 2928852Domain d4uz3b1: 4uz3 B:17-62 [301046]
        automated match to d4uz3c_
        complexed with dio, ndg, so4
      4. 2928853Domain d4uz3b2: 4uz3 B:63-110 [301047]
        automated match to d4uz3c_
        complexed with dio, ndg, so4
      5. 2928854Domain d4uz3c_: 4uz3 C: [268983]
        automated match to d1e0ga_
        complexed with dio, ndg, so4
  7. 2928863Volvox carteri [TaxId:3068] [330095] (3 PDB entries)
    1. Domain for 5k2l:
    2. Domain for 5yz6:
    3. Domain for 5yzk:

More info for Protein automated matches from d.7.1.0: automated matches

Timeline for Protein automated matches from d.7.1.0: automated matches: