Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1482597Fold a.22: Histone-fold [47112] (1 superfamily)
    core: 3 helices; long middle helix is flanked at each end with shorter ones
  4. 1482598Superfamily a.22.1: Histone-fold [47113] (5 families) (S)
  5. 1482599Family a.22.1.1: Nucleosome core histones [47114] (6 proteins)
    form octamers composed of two copies of each of the four histones
  6. 1483034Protein automated matches [193445] (6 species)
    not a true protein

Species:

  1. 1483035African clawed frog (Xenopus laevis) [TaxId:8355] [225181] (3 PDB entries)
    1. Domain for 2hue:
    2. Domains for 4eo5:
      1. 1483038Domain d4eo5b_: 4eo5 B: [201884]
        Other proteins in same PDB: d4eo5a_
        automated match to d2io5b_
        complexed with act, gol; mutant
      2. 1483039Domain d4eo5c_: 4eo5 C: [201885]
        Other proteins in same PDB: d4eo5a_
        automated match to d1s32f_
        complexed with act, gol; mutant
    3. Domain for 4kha:
  2. 1483040Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256335] (1 PDB entry)
  3. 1483047Fruit fly (Drosophila melanogaster) [TaxId:7227] [225310] (2 PDB entries)
    1. Domains for 2nqb:
      1. 1483048Domain d2nqbc_: 2nqb C: [198175]
        Other proteins in same PDB: d2nqba_, d2nqbb_, d2nqbe_, d2nqbf_
        automated match to d1id3c_
        protein/DNA complex
      2. 1483049Domain d2nqbd_: 2nqb D: [238764]
        Other proteins in same PDB: d2nqba_, d2nqbb_, d2nqbe_, d2nqbf_
        automated match to d3mgpd_
        protein/DNA complex
      3. 1483050Domain d2nqbg_: 2nqb G: [198176]
        Other proteins in same PDB: d2nqba_, d2nqbb_, d2nqbe_, d2nqbf_
        automated match to d1id3c_
        protein/DNA complex
      4. 1483051Domain d2nqbh_: 2nqb H: [238765]
        Other proteins in same PDB: d2nqba_, d2nqbb_, d2nqbe_, d2nqbf_
        automated match to d3mgpd_
        protein/DNA complex
    2. Domains for 2pyo:
      1. 1483052Domain d2pyoc_: 2pyo C: [198265]
        Other proteins in same PDB: d2pyoa_, d2pyob_, d2pyoe_, d2pyof_
        automated match to d3lelg_
        protein/DNA complex; complexed with cl, mn
      2. 1483053Domain d2pyod_: 2pyo D: [238818]
        Other proteins in same PDB: d2pyoa_, d2pyob_, d2pyoe_, d2pyof_
        automated match to d3mgrd_
        protein/DNA complex; complexed with cl, mn
      3. 1483054Domain d2pyog_: 2pyo G: [198266]
        Other proteins in same PDB: d2pyoa_, d2pyob_, d2pyoe_, d2pyof_
        automated match to d3lelg_
        protein/DNA complex; complexed with cl, mn
      4. 1483055Domain d2pyoh_: 2pyo H: [238819]
        Other proteins in same PDB: d2pyoa_, d2pyob_, d2pyoe_, d2pyof_
        automated match to d3mgrd_
        protein/DNA complex; complexed with cl, mn
  4. 1483056Human (Homo sapiens) [TaxId:9606] [193446] (25 PDB entries)
    1. Domain for 1u35:
    2. Domains for 3a6n:
      1. 1483099Domain d3a6nb_: 3a6n B: [231761]
        Other proteins in same PDB: d3a6na_, d3a6ne_
        automated match to d1kx3f_
        protein/DNA complex; complexed with cl, mn
      2. 1483100Domain d3a6nc_: 3a6n C: [239082]
        Other proteins in same PDB: d3a6na_, d3a6ne_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn
      3. 1483101Domain d3a6nd_: 3a6n D: [239083]
        Other proteins in same PDB: d3a6na_, d3a6ne_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn
      4. 1483102Domain d3a6nf_: 3a6n F: [231762]
        Other proteins in same PDB: d3a6na_, d3a6ne_
        automated match to d1kx3f_
        protein/DNA complex; complexed with cl, mn
      5. 1483103Domain d3a6ng_: 3a6n G: [239084]
        Other proteins in same PDB: d3a6na_, d3a6ne_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn
      6. 1483104Domain d3a6nh_: 3a6n H: [239085]
        Other proteins in same PDB: d3a6na_, d3a6ne_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn
    3. Domains for 3afa:
      1. 1483083Domain d3afab_: 3afa B: [239100]
        Other proteins in same PDB: d3afaa_, d3afae_
        automated match to d3a6nb_
        protein/DNA complex; complexed with cl, mn
      2. 1483084Domain d3afac_: 3afa C: [239101]
        Other proteins in same PDB: d3afaa_, d3afae_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn
      3. 1483085Domain d3afad_: 3afa D: [239102]
        Other proteins in same PDB: d3afaa_, d3afae_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn
      4. 1483086Domain d3afaf_: 3afa F: [239103]
        Other proteins in same PDB: d3afaa_, d3afae_
        automated match to d3a6nf_
        protein/DNA complex; complexed with cl, mn
      5. 1483087Domain d3afag_: 3afa G: [239104]
        Other proteins in same PDB: d3afaa_, d3afae_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn
      6. 1483088Domain d3afah_: 3afa H: [239105]
        Other proteins in same PDB: d3afaa_, d3afae_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn
    4. Domains for 3ayw:
      1. 1483117Domain d3aywa_: 3ayw A: [196168]
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483118Domain d3aywb_: 3ayw B: [239120]
        automated match to d3a6nb_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483119Domain d3aywc_: 3ayw C: [239121]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483120Domain d3aywd_: 3ayw D: [239122]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483121Domain d3aywe_: 3ayw E: [198974]
        automated match to d3aywa_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483122Domain d3aywf_: 3ayw F: [239123]
        automated match to d3a6nf_
        protein/DNA complex; complexed with cl, mn; mutant
      7. 1483123Domain d3aywg_: 3ayw G: [239124]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      8. 1483124Domain d3aywh_: 3ayw H: [239125]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    5. Domains for 3aze:
      1. 1483140Domain d3azeb_: 3aze B: [245291]
        automated match to d1kx3f_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483141Domain d3azec_: 3aze C: [245292]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483142Domain d3azed_: 3aze D: [245293]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483143Domain d3azef_: 3aze F: [245294]
        automated match to d1kx3f_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483144Domain d3azeg_: 3aze G: [245295]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483145Domain d3azeh_: 3aze H: [245296]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    6. Domains for 3azf:
      1. 1483089Domain d3azfa_: 3azf A: [196167]
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483090Domain d3azfb_: 3azf B: [239126]
        automated match to d3a6nb_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483091Domain d3azfc_: 3azf C: [239127]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483092Domain d3azfd_: 3azf D: [239128]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483093Domain d3azfe_: 3azf E: [198989]
        automated match to d3azfa_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483094Domain d3azff_: 3azf F: [239129]
        automated match to d3a6nf_
        protein/DNA complex; complexed with cl, mn; mutant
      7. 1483095Domain d3azfg_: 3azf G: [239130]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      8. 1483096Domain d3azfh_: 3azf H: [239131]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    7. Domains for 3azg:
      1. 1483068Domain d3azga_: 3azg A: [196166]
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483069Domain d3azgb_: 3azg B: [239132]
        automated match to d3a6nb_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483070Domain d3azgc_: 3azg C: [239133]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483071Domain d3azgd_: 3azg D: [239134]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483072Domain d3azge_: 3azg E: [198990]
        automated match to d3azga_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483073Domain d3azgf_: 3azg F: [239135]
        automated match to d3a6nf_
        protein/DNA complex; complexed with cl, mn; mutant
      7. 1483074Domain d3azgg_: 3azg G: [239136]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      8. 1483075Domain d3azgh_: 3azg H: [239137]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    8. Domains for 3azi:
      1. 1483105Domain d3azib_: 3azi B: [208485]
        Other proteins in same PDB: d3azia_, d3azie_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483106Domain d3azic_: 3azi C: [239138]
        Other proteins in same PDB: d3azia_, d3azie_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483107Domain d3azid_: 3azi D: [239139]
        Other proteins in same PDB: d3azia_, d3azie_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483108Domain d3azif_: 3azi F: [208487]
        Other proteins in same PDB: d3azia_, d3azie_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483109Domain d3azig_: 3azi G: [239140]
        Other proteins in same PDB: d3azia_, d3azie_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483110Domain d3azih_: 3azi H: [239141]
        Other proteins in same PDB: d3azia_, d3azie_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    9. Domains for 3azj:
      1. 1483125Domain d3azja_: 3azj A: [193636]
        Other proteins in same PDB: d3azje_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483126Domain d3azjb_: 3azj B: [198991]
        Other proteins in same PDB: d3azje_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483127Domain d3azjc_: 3azj C: [239142]
        Other proteins in same PDB: d3azje_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483128Domain d3azjd_: 3azj D: [239143]
        Other proteins in same PDB: d3azje_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483129Domain d3azjf_: 3azj F: [198993]
        Other proteins in same PDB: d3azje_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483130Domain d3azjg_: 3azj G: [239144]
        Other proteins in same PDB: d3azje_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      7. 1483131Domain d3azjh_: 3azj H: [239145]
        Other proteins in same PDB: d3azje_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    10. Domains for 3azl:
      1. 1483076Domain d3azlb_: 3azl B: [198995]
        Other proteins in same PDB: d3azla_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483077Domain d3azlc_: 3azl C: [239146]
        Other proteins in same PDB: d3azla_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483078Domain d3azld_: 3azl D: [239147]
        Other proteins in same PDB: d3azla_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483079Domain d3azle_: 3azl E: [193637]
        Other proteins in same PDB: d3azla_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483080Domain d3azlf_: 3azl F: [198996]
        Other proteins in same PDB: d3azla_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483081Domain d3azlg_: 3azl G: [239148]
        Other proteins in same PDB: d3azla_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      7. 1483082Domain d3azlh_: 3azl H: [239149]
        Other proteins in same PDB: d3azla_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    11. Domains for 3azm:
      1. 1483133Domain d3azma_: 3azm A: [193638]
        Other proteins in same PDB: d3azme_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483134Domain d3azmb_: 3azm B: [198997]
        Other proteins in same PDB: d3azme_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483135Domain d3azmc_: 3azm C: [239150]
        Other proteins in same PDB: d3azme_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483136Domain d3azmd_: 3azm D: [239151]
        Other proteins in same PDB: d3azme_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483137Domain d3azmf_: 3azm F: [198999]
        Other proteins in same PDB: d3azme_
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483138Domain d3azmg_: 3azm G: [239152]
        Other proteins in same PDB: d3azme_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      7. 1483139Domain d3azmh_: 3azm H: [239153]
        Other proteins in same PDB: d3azme_
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    12. Domains for 3azn:
      1. 1483111Domain d3aznb_: 3azn B: [245297]
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 1483112Domain d3aznc_: 3azn C: [245298]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      3. 1483113Domain d3aznd_: 3azn D: [245299]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
      4. 1483114Domain d3aznf_: 3azn F: [245300]
        automated match to d1s32f_
        protein/DNA complex; complexed with cl, mn; mutant
      5. 1483115Domain d3azng_: 3azn G: [245301]
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn; mutant
      6. 1483116Domain d3aznh_: 3azn H: [245302]
        automated match to d4cayb_
        protein/DNA complex; complexed with cl, mn; mutant
    13. Domain for 3nqj:
    14. Domain for 3nqu:
    15. Domain for 3r45:
    16. Domains for 3wa9:
      1. 1483152Domain d3wa9b_: 3wa9 B: [250733]
        automated match to d1kx3f_
        protein/DNA complex
      2. 1483153Domain d3wa9c_: 3wa9 C: [250734]
        automated match to d1id3c_
        protein/DNA complex
      3. 1483154Domain d3wa9d_: 3wa9 D: [250735]
        automated match to d4cayb_
        protein/DNA complex
      4. 1483155Domain d3wa9f_: 3wa9 F: [250736]
        automated match to d1kx3f_
        protein/DNA complex
      5. 1483156Domain d3wa9g_: 3wa9 G: [250737]
        automated match to d1id3c_
        protein/DNA complex
      6. 1483157Domain d3wa9h_: 3wa9 H: [250738]
        automated match to d4cayb_
        protein/DNA complex
    17. Domains for 3wkj:
      1. 1483146Domain d3wkjb_: 3wkj B: [238515]
        Other proteins in same PDB: d3wkja_, d3wkje_
        automated match to d3a6nb_
        protein/DNA complex; complexed with cl, mn
      2. 1483147Domain d3wkjc_: 3wkj C: [239919]
        Other proteins in same PDB: d3wkja_, d3wkje_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn
      3. 1483148Domain d3wkjd_: 3wkj D: [239920]
        Other proteins in same PDB: d3wkja_, d3wkje_
        automated match to d2f8nd_
        protein/DNA complex; complexed with cl, mn
      4. 1483149Domain d3wkjf_: 3wkj F: [238516]
        Other proteins in same PDB: d3wkja_, d3wkje_
        automated match to d3a6nf_
        protein/DNA complex; complexed with cl, mn
      5. 1483150Domain d3wkjg_: 3wkj G: [239921]
        Other proteins in same PDB: d3wkja_, d3wkje_
        automated match to d2pyoc_
        protein/DNA complex; complexed with cl, mn
      6. 1483151Domain d3wkjh_: 3wkj H: [239922]
        Other proteins in same PDB: d3wkja_, d3wkje_
        automated match to d2f8nd_
        protein/DNA complex; complexed with cl, mn
    18. Domains for 4cay:
      1. 1483057Domain d4caya_: 4cay A: [236116]
        automated match to d1kx3c_
      2. 1483058Domain d4cayb_: 4cay B: [236115]
        automated match to d3mgrd_
    19. Domain for 4h9n:
    20. Domain for 4h9o:
    21. Domain for 4h9p:
    22. Domain for 4h9q:
    23. Domain for 4h9r:
    24. Domains for 4h9s:
      1. 1483066Domain d4h9sa_: 4h9s A: [193447]
        Other proteins in same PDB: d4h9sc_, d4h9sd_
        automated match to d1kx5a_
        protein/DNA complex; complexed with po4
      2. 1483067Domain d4h9sb_: 4h9s B: [202394]
        Other proteins in same PDB: d4h9sc_, d4h9sd_
        automated match to d4h9sa_
        protein/DNA complex; complexed with po4
    25. Domain for 4hga:
  5. 1483158Kluyveromyces lactis [TaxId:284590] [226140] (2 PDB entries)
    1. Domain for 2yfv:
    2. Domains for 2yfw:
      1. 1483160Domain d2yfwa_: 2yfw A: [207574]
        automated match to d2hioc_
      2. 1483161Domain d2yfwb_: 2yfw B: [207575]
        automated match to d1id3f_
      3. 1483162Domain d2yfwc_: 2yfw C: [207576]
        automated match to d2hioc_
      4. 1483163Domain d2yfwd_: 2yfw D: [207577]
        automated match to d1id3f_
      5. 1483164Domain d2yfwe_: 2yfw E: [207578]
        automated match to d2hioc_
      6. 1483165Domain d2yfwf_: 2yfw F: [207579]
        automated match to d1id3f_
      7. 1483166Domain d2yfwg_: 2yfw G: [207580]
        automated match to d2hioc_
      8. 1483167Domain d2yfwh_: 2yfw H: [207581]
        automated match to d1id3f_
  6. 1483168Mouse (Mus musculus) [TaxId:10090] [254907] (1 PDB entry)

More info for Protein automated matches from a.22.1.1: Nucleosome core histones

Timeline for Protein automated matches from a.22.1.1: Nucleosome core histones: