SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.299: Ns1 effector domain-like [143020] (1 superfamily)
beta-X-beta(5)-alpha-beta-alpha; 2 layers: a/b; bifurcated beta-sheet; order 23654[1,7]
Superfamily d.299.1: Ns1 effector domain-like [143021] (1 family)
automatically mapped to Pfam PF00600
Family d.299.1.1: Ns1 effector domain-like [143022] (2 proteins)
C-terminal part of Pfam PF00600
Protein automated matches [190936] (7 species)
not a true protein

Species:

Influenza A virus (a/california/07/2009(h1n1)) [TaxId:641809] [189299] (1 PDB entry)
- Domains for 3m5r:
  1. Domain d3m5ra1: 3m5r A:79-203 [180872]
    Other proteins in same PDB: d3m5ra2, d3m5rb2
    automated match to d2gx9a1
  2. Domain d3m5rb1: 3m5r B:79-203 [180873]
    Other proteins in same PDB: d3m5ra2, d3m5rb2
    automated match to d2gx9a1
  3. Domain d3m5rd_: 3m5r D: [180874]
    Other proteins in same PDB: d3m5ra2, d3m5rb2
    automated match to d2gx9a1
  4. Domain d3m5re_: 3m5r E: [180875]
    Other proteins in same PDB: d3m5ra2, d3m5rb2
    automated match to d2gx9a1
  5. Domain d3m5rf_: 3m5r F: [180876]
    Other proteins in same PDB: d3m5ra2, d3m5rb2
    automated match to d2gx9a1
  6. Domain d3m5rg_: 3m5r G: [180877]
    Other proteins in same PDB: d3m5ra2, d3m5rb2
    automated match to d2gx9a1
Influenza A virus (a/udorn/307/1972(h3n2)) [TaxId:381517] [188730] (12 PDB entries)
1. Domains for 3d6r:
  1. Domain d3d6ra_: 3d6r A: [209031]
    automated match to d3kwgb_
  2. Domain d3d6rb1: 3d6r B:83-202 [209032]
    automated match to d3kwgb_
2. Domains for 3ee8:
  1. Domain d3ee8a_: 3ee8 A: [174883]
    automated match to d2gx9a1
  2. Domain d3ee8b_: 3ee8 B: [174884]
    automated match to d2gx9a1
3. Domains for 3ee9:
  1. Domain d3ee9a_: 3ee9 A: [174885]
    automated match to d2gx9a1
    complexed with so4
  2. Domain d3ee9b_: 3ee9 B: [174886]
    automated match to d2gx9a1
    complexed with so4
4. Domains for 3kwg:
  1. Domain d3kwga_: 3kwg A: [179750]
    Other proteins in same PDB: d3kwgb2
    automated match to d2gx9a1
    mutant
  2. Domain d3kwgb1: 3kwg B:74-205 [179751]
    Other proteins in same PDB: d3kwgb2
    automated match to d2gx9a1
    mutant
5. Domains for 3kwi:
  1. Domain d3kwia_: 3kwi A: [179752]
    automated match to d2gx9a1
    mutant
  2. Domain d3kwib_: 3kwi B: [179753]
    automated match to d2gx9a1
    mutant
6. Domains for 3l4q:
  1. Domain d3l4qa_: 3l4q A: [247332]
    Other proteins in same PDB: d3l4qc_, d3l4qd_
    automated match to d3kwgb_
    complexed with gol
  2. Domain d3l4qb_: 3l4q B: [247333]
    Other proteins in same PDB: d3l4qc_, d3l4qd_
    automated match to d3kwgb_
    complexed with gol
7. Domains for 3o9q:
  1. Domain d3o9qa_: 3o9q A: [214251]
    automated match to d3kwgb_
    mutant
  2. Domain d3o9qb_: 3o9q B: [214252]
    automated match to d3kwgb_
    mutant
8. Domains for 3o9r:
  1. Domain d3o9ra_: 3o9r A: [214253]
    automated match to d3kwgb_
    mutant
  2. Domain d3o9rb_: 3o9r B: [214254]
    automated match to d3kwgb_
    mutant
9. Domains for 3o9s:
  1. Domain d3o9sa_: 3o9s A: [214255]
    automated match to d3kwgb_
  2. Domain d3o9sb_: 3o9s B: [214256]
    automated match to d3kwgb_
10. Domains for 3o9t:
  1. Domain d3o9ta_: 3o9t A: [214257]
    automated match to d3kwgb_
    complexed with p6g
  2. Domain d3o9tb_: 3o9t B: [214258]
    automated match to d3kwgb_
    complexed with p6g
11. Domains for 3oa9:
  1. Domain d3oa9a_: 3oa9 A: [214268]
    automated match to d3kwgb_
  2. Domain d3oa9b_: 3oa9 B: [214269]
    automated match to d3kwgb_
12. Domain for 3rvc:
  - Domain d3rvca_: 3rvc A: [216083]
    automated match to d3kwgb_
    mutant
Influenza a virus (strain a/brevig mission/1/1918 h1n1) [TaxId:88776] [356001] (3 PDB entries)
1. Domains for 6dgk:
  1. Domain d6dgka_: 6dgk A: [356013]
    automated match to d3o9qb_
    mutant
  2. Domain d6dgkb_: 6dgk B: [356002]
    automated match to d3o9qb_
    mutant
2. Domains for 6ox7:
  1. Domain d6ox7a_: 6ox7 A: [384055]
    Other proteins in same PDB: d6ox7d1, d6ox7d2
    automated match to d2gx9b_
  2. Domain d6ox7b_: 6ox7 B: [384061]
    Other proteins in same PDB: d6ox7d1, d6ox7d2
    automated match to d2gx9b_
3. Domains for 6u28:
  1. Domain d6u28a_: 6u28 A: [384462]
    Other proteins in same PDB: d6u28d1, d6u28d2
    automated match to d2gx9b_
  2. Domain d6u28b_: 6u28 B: [384316]
    Other proteins in same PDB: d6u28d1, d6u28d2
    automated match to d2gx9b_
Influenza a virus (strain a/puerto rico/8/1934 h1n1) [TaxId:211044] [352181] (1 PDB entry)
- Domains for 5nt1:
  1. Domain d5nt1b_: 5nt1 B: [352182]
    automated match to d2gx9a1
  2. Domain d5nt1f_: 5nt1 F: [352253]
    automated match to d2gx9a1
  3. Domain d5nt1j_: 5nt1 J: [352259]
    automated match to d2gx9a1
Influenza A virus [TaxId:221021] [255355] (1 PDB entry)
- Domain for 2kkz:
  - Domain d2kkza1: 2kkz A:84-215 [242547]
    Other proteins in same PDB: d2kkza2
    automated match to d3o9sa_
    mutant
Influenza A virus [TaxId:680789] [189731] (3 PDB entries)
1. Domains for 3p31:
  1. Domain d3p31a_: 3p31 A: [183479]
    automated match to d2gx9a1
    complexed with scn
  2. Domain d3p31b_: 3p31 B: [183480]
    automated match to d2gx9a1
    complexed with scn
  3. Domain d3p31c_: 3p31 C: [183481]
    automated match to d2gx9a1
    complexed with scn
  4. Domain d3p31d_: 3p31 D: [183482]
    automated match to d2gx9a1
    complexed with scn
2. Domains for 3p38:
  1. Domain d3p38a_: 3p38 A: [183483]
    automated match to d2gx9a1
    mutant
  2. Domain d3p38b_: 3p38 B: [183484]
    automated match to d2gx9a1
    mutant
  3. Domain d3p38c_: 3p38 C: [183485]
    automated match to d2gx9a1
    mutant
3. Domains for 3p39:
  1. Domain d3p39a_: 3p39 A: [248408]
    automated match to d3p38a_
    mutant
  2. Domain d3p39b_: 3p39 B: [248409]
    automated match to d3p38a_
    mutant
  3. Domain d3p39c_: 3p39 C: [248410]
    automated match to d3p38a_
    mutant
  4. Domain d3p39d_: 3p39 D: [248411]
    automated match to d3p38a_
    mutant
  5. Domain d3p39e_: 3p39 E: [248412]
    automated match to d3p38a_
    mutant
  6. Domain d3p39f_: 3p39 F: [248413]
    automated match to d3p38a_
    mutant
Influenza A virus, different strains [TaxId:11320] [188483] (2 PDB entries)
1. Domains for 2rhk:
  1. Domain d2rhka_: 2rhk A: [168125]
    automated match to d2gx9a1
    protein/RNA complex; complexed with no3, trs, zn
  2. Domain d2rhkb_: 2rhk B: [168126]
    automated match to d2gx9a1
    protein/RNA complex; complexed with no3, trs, zn
2. Domain for 6nu0:
  - Domain d6nu0a_: 6nu0 A: [378809]
    automated match to d3p39d_

More info for Protein automated matches from d.299.1.1: Ns1 effector domain-like

Timeline for Protein automated matches from d.299.1.1: Ns1 effector domain-like:

Protein automated matches from d.299.1.1: Ns1 effector domain-like first appeared in SCOPe 2.01
Protein automated matches from d.299.1.1: Ns1 effector domain-like appears in SCOPe 2.06
Protein automated matches from d.299.1.1: Ns1 effector domain-like appears in the current release, SCOPe 2.08