Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1427772Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 1427979Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. 1428187Family d.110.3.0: automated matches [191387] (1 protein)
    not a true family
  6. 1428188Protein automated matches [190492] (10 species)
    not a true protein

Species:

  1. 1428189Azotobacter vinelandii [TaxId:354] [187754] (1 PDB entry)
  2. 1428192Bacillus subtilis [TaxId:1423] [225313] (2 PDB entries)
    1. Domains for 2pr5:
      1. 1428193Domain d2pr5a_: 2pr5 A: [205596]
        automated match to d4hoia_
        complexed with acy, fmn, na
      2. 1428194Domain d2pr5b_: 2pr5 B: [205597]
        automated match to d4hoia_
        complexed with acy, fmn, na
    2. Domains for 2pr6:
      1. 1428195Domain d2pr6a_: 2pr6 A: [205598]
        automated match to d4hoia_
        complexed with fmn
      2. 1428196Domain d2pr6b_: 2pr6 B: [205599]
        automated match to d4hoia_
        complexed with fmn
  3. 1428197Brucella melitensis [TaxId:29459] [226408] (1 PDB entry)
  4. 1428200Deinococcus radiodurans [TaxId:1299] [226273] (4 PDB entries)
    1. Domain for 3s7n:
    2. Domain for 3s7o:
    3. Domain for 3s7p:
    4. Domain for 3s7q:
  5. 1428205Deinococcus radiodurans [TaxId:243230] [230052] (1 PDB entry)
  6. 1428207Fruit fly (Drosophila melanogaster) [TaxId:7227] [226626] (1 PDB entry)
  7. 1428210Human (Homo sapiens) [TaxId:9606] [187434] (10 PDB entries)
    1. Domain for 2b02:
    2. Domain for 3f1n:
    3. Domain for 3f1o:
    4. Domain for 3f1p:
    5. Domain for 3h7w:
    6. Domain for 3h82:
    7. Domains for 4eq1:
      1. 1428218Domain d4eq1a_: 4eq1 A: [196838]
        automated match to d3h82b_
        complexed with pe5
      2. 1428219Domain d4eq1b_: 4eq1 B: [201946]
        automated match to d4eq1a_
        complexed with pe5
    8. Domain for 4ghi:
    9. Domain for 4gs9:
    10. Domain for 4h6j:
  8. 1428222Mouse (Mus musculus) [TaxId:10090] [196720] (2 PDB entries)
    1. Domains for 4hoi:
      1. 1428223Domain d4hoia_: 4hoi A: [197389]
        automated match to d1bywa_
        complexed with so4
      2. 1428224Domain d4hoib_: 4hoi B: [202454]
        automated match to d4hoia_
        complexed with so4
      3. 1428225Domain d4hoic_: 4hoi C: [202455]
        automated match to d4hoid_
        complexed with so4
      4. 1428226Domain d4hoid_: 4hoi D: [196721]
        automated match to d1bywa_
        complexed with so4
    2. Domains for 4llo:
      1. 1428227Domain d4llob_: 4llo B: [224697]
        automated match to d4hp9a_
      2. 1428228Domain d4llod_: 4llo D: [224698]
        automated match to d4hp9a_
      3. 1428229Domain d4llof_: 4llo F: [224699]
        automated match to d4hp9a_
      4. 1428230Domain d4lloh_: 4llo H: [224700]
        automated match to d4hp9a_
  9. 1428231Rhodopseudomonas palustris [TaxId:258594] [226419] (1 PDB entry)
  10. 1428234Thale cress (Arabidopsis thaliana) [TaxId:3702] [188508] (1 PDB entry)

More info for Protein automated matches from d.110.3.0: automated matches

Timeline for Protein automated matches from d.110.3.0: automated matches: