Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1143364Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1143706Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 1144315Family c.1.2.0: automated matches [191350] (1 protein)
    not a true family
  6. 1144316Protein automated matches [190292] (10 species)
    not a true protein

Species:

  1. 1144317Aquifex aeolicus [TaxId:224324] [194332] (1 PDB entry)
  2. 1144319Brucella melitensis [TaxId:359391] [189740] (1 PDB entry)
  3. 1144322Campylobacter jejuni [TaxId:192222] [194783] (1 PDB entry)
  4. 1144324Coxiella burnetii [TaxId:777] [196137] (1 PDB entry)
  5. 1144326Escherichia coli [TaxId:562] [188791] (2 PDB entries)
    1. Domains for 3ct7:
      1. 1144333Domain d3ct7a_: 3ct7 A: [173446]
        automated match to d2flia1
        complexed with mg, so4
      2. 1144334Domain d3ct7b_: 3ct7 B: [173447]
        automated match to d2flia1
        complexed with mg, so4
      3. 1144335Domain d3ct7c_: 3ct7 C: [173448]
        automated match to d2flia1
        complexed with mg, so4
      4. 1144336Domain d3ct7d_: 3ct7 D: [173449]
        automated match to d2flia1
        complexed with mg, so4
      5. 1144337Domain d3ct7e_: 3ct7 E: [173450]
        automated match to d2flia1
        complexed with mg, so4
      6. 1144338Domain d3ct7f_: 3ct7 F: [173451]
        automated match to d2flia1
        complexed with mg, so4
    2. Domains for 3ctl:
      1. 1144327Domain d3ctla_: 3ctl A: [173452]
        automated match to d2flia1
        complexed with mg, s6p
      2. 1144328Domain d3ctlb_: 3ctl B: [173453]
        automated match to d2flia1
        complexed with mg, s6p
      3. 1144329Domain d3ctlc_: 3ctl C: [173454]
        automated match to d2flia1
        complexed with mg, s6p
      4. 1144330Domain d3ctld_: 3ctl D: [173455]
        automated match to d2flia1
        complexed with mg, s6p
      5. 1144331Domain d3ctle_: 3ctl E: [173456]
        automated match to d2flia1
        complexed with mg, s6p
      6. 1144332Domain d3ctlf_: 3ctl F: [173457]
        automated match to d2flia1
        complexed with mg, s6p
  6. 1144339Human (Homo sapiens) [TaxId:9606] [189658] (4 PDB entries)
    1. Domains for 3ovp:
      1. 1144340Domain d3ovpa_: 3ovp A: [183320]
        automated match to d1h1ya_
        complexed with fe2, xpe
      2. 1144341Domain d3ovpb_: 3ovp B: [183321]
        automated match to d1h1ya_
        complexed with fe2, xpe
    2. Domains for 3ovq:
      1. 1144344Domain d3ovqa_: 3ovq A: [183322]
        automated match to d1h1ya_
        complexed with 5rp, fe2, xpe
      2. 1144345Domain d3ovqb_: 3ovq B: [183323]
        automated match to d1h1ya_
        complexed with 5rp, fe2, xpe
    3. Domains for 3ovr:
      1. 1144342Domain d3ovra_: 3ovr A: [183324]
        automated match to d1h1ya_
        complexed with 5sp, fe2, xpe
      2. 1144343Domain d3ovrb_: 3ovr B: [183325]
        automated match to d1h1ya_
        complexed with 5sp, fe2, xpe
    4. Domains for 3qc3:
      1. 1144346Domain d3qc3a_: 3qc3 A: [184333]
        automated match to d1h1ya_
        complexed with fe, gol, ni, zn
      2. 1144347Domain d3qc3b_: 3qc3 B: [184334]
        automated match to d1h1ya_
        complexed with fe, gol, ni, zn
  7. 1144348Salmonella enterica [TaxId:90370] [196385] (1 PDB entry)
  8. 1144350Salmonella typhimurium [TaxId:90371] [189019] (2 PDB entries)
    1. Domains for 3f4w:
      1. 1144353Domain d3f4wa_: 3f4w A: [175470]
        automated match to d1xbxa1
        complexed with mli
      2. 1144354Domain d3f4wb_: 3f4w B: [175471]
        automated match to d1xbxa1
        complexed with mli
    2. Domains for 3igs:
      1. 1144351Domain d3igsa_: 3igs A: [178315]
        automated match to d1yxya1
        complexed with 16g, cl, so4
      2. 1144352Domain d3igsb_: 3igs B: [178316]
        automated match to d1yxya1
        complexed with 16g, cl, so4
  9. 1144355Streptococcus pyogenes [TaxId:1314] [187097] (1 PDB entry)
  10. 1144367Vibrio cholerae [TaxId:666] [189015] (2 PDB entries)
    1. Domains for 3ieb:
      1. 1144372Domain d3ieba_: 3ieb A: [178266]
        automated match to d1kv8a_
        complexed with gol, so4
      2. 1144373Domain d3iebb_: 3ieb B: [178267]
        automated match to d1kv8a_
        complexed with gol, so4
      3. 1144374Domain d3iebc_: 3ieb C: [178268]
        automated match to d1kv8a_
        complexed with gol, so4
      4. 1144375Domain d3iebd_: 3ieb D: [178269]
        automated match to d1kv8a_
        complexed with gol, so4
      5. 1144376Domain d3iebe_: 3ieb E: [178270]
        automated match to d1kv8a_
        complexed with gol, so4
    2. Domains for 3jr2:
      1. 1144368Domain d3jr2a_: 3jr2 A: [178713]
        automated match to d1kv8a_
        complexed with edo, gol, mg, so4
      2. 1144369Domain d3jr2b_: 3jr2 B: [178714]
        automated match to d1kv8a_
        complexed with edo, gol, mg, so4
      3. 1144370Domain d3jr2c_: 3jr2 C: [178715]
        automated match to d1kv8a_
        complexed with edo, gol, mg, so4
      4. 1144371Domain d3jr2d_: 3jr2 D: [178716]
        automated match to d1kv8a_
        complexed with edo, gol, mg, so4

More info for Protein automated matches from c.1.2.0: automated matches

Timeline for Protein automated matches from c.1.2.0: automated matches: