SCOPe 2.08: Structural Classification of Proteins

PDB entry 2v49

View 2v49 on RCSB PDB site
Description: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet (Part 4 of 4). This file contains the 50S subunit of Molecule 2.
Class: ribosome
Keywords: ribosome, rrf, recycling, tRNA, mRNA, translation
Deposited on 2007-06-28, released 2007-07-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3.8 Å
R-factor: 0.265
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

Chain '0':
Compound: 50S ribosomal protein L27
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49 (0-0)
  - conflict (5)
  - conflict (7)
- Uniprot P60493 (1-84)
Chain '1':
Compound: 50S ribosomal protein L28
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot P60494
Chain '2':
Compound: 50S ribosomal protein L29
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHP6
Chain '3':
Compound: 50S ribosomal protein L30
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49 (0-0)
- Uniprot Q5SHQ6 (1-59)
Chain '4':
Compound: 50S ribosomal protein L31
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SJE1 (0-End)
Domains in SCOPe 2.08: d2v4941
Chain '5':
Compound: 50S ribosomal protein L32
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot P80339 (1-59)
Domains in SCOPe 2.08: d2v4951
Chain '6':
Compound: 50S ribosomal protein L33
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot P35871
Domains in SCOPe 2.08: d2v4961
Chain '7':
Compound: 50S ribosomal protein L34
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot P80340 (0-48)
Domains in SCOPe 2.08: d2v4971
Chain '8':
Compound: 50S ribosomal protein L35
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot P80341 (1-64)
Chain 'A':
Compound: 23S ribosomal RNA
Species: Thermus thermophilus [TaxId:300852]
Chain 'B':
Compound: 5S ribosomal RNA
Species: Thermus thermophilus [TaxId:300852]
Chain 'C':
Compound: 50s ribosomal protein l1
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
  - conflict (106)
  - conflict (132)
- Uniprot Q5SLP7
Chain 'D':
Compound: 50S ribosomal protein L2
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot P60405 (1-End)
Chain 'E':
Compound: 50S ribosomal protein L3
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHN8 (0-End)
Domains in SCOPe 2.08: d2v49e1
Chain 'F':
Compound: 50S ribosomal protein L4
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHN9 (0-End)
Domains in SCOPe 2.08: d2v49f1
Chain 'G':
Compound: 50S ribosomal protein L5
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot Q5SHQ0 (1-181)
Chain 'H':
Compound: 50S ribosomal protein L6
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot Q5SHQ3
Domains in SCOPe 2.08: d2v49h1, d2v49h2
Chain 'I':
Compound: 50S ribosomal protein L9
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLQ1 (0-End)
Chain 'N':
Compound: 50S ribosomal protein L13
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot P60488 (0-End)
Domains in SCOPe 2.08: d2v49n1
Chain 'O':
Compound: 50S ribosomal protein L14
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHP8 (0-121)
Chain 'P':
Compound: 50S ribosomal protein L15
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHQ7 (Start-149)
Domains in SCOPe 2.08: d2v49p1
Chain 'Q':
Compound: 50S ribosomal protein L16
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot P60489 (Start-140)
Chain 'R':
Compound: 50S ribosomal protein L17
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9Z9H5 (Start-117)
Chain 'S':
Compound: 50S ribosomal protein L18
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot Q5SHQ4
Chain 'T':
Compound: 50S ribosomal protein L19
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot P60490 (0-End)
Domains in SCOPe 2.08: d2v49t1
Chain 'U':
Compound: 50S ribosomal protein L20
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2V49
- Uniprot P60491 (1-117)
Domains in SCOPe 2.08: d2v49u1
Chain 'V':
Compound: 50S ribosomal protein L21
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot P60492 (0-100)
Domains in SCOPe 2.08: d2v49v1
Chain 'W':
Compound: 50S ribosomal protein L22
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHP3 (0-112)
Chain 'X':
Compound: 50S ribosomal protein L23
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHP0
Chain 'Y':
Compound: 50S ribosomal protein L24
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHP9
Domains in SCOPe 2.08: d2v49y1
Chain 'Z':
Compound: 50S ribosomal protein L25
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHZ1
Domains in SCOPe 2.08: d2v49z1

PDB Chain Sequences:

Chain '0':
No sequence available.
Chain '1':
No sequence available.
Chain '2':
No sequence available.
Chain '3':
No sequence available.

Chain '4':
Sequence, based on SEQRES records: (download)

>2v494 (4:)
mkegihpklvpariicgcgnvietystkpeiyvevcskchpfytgqqrfvdtegrverfq
rrygdsyrkgr

Sequence, based on observed residues (ATOM records): (download)

>2v494 (4:)
mkegihpklvpariicgcgnvietystkpeiyvevcskchpfytgqqrfv

Chain '5':
Sequence, based on SEQRES records: (download)

>2v495 (5:)
makhpvpkkktskarrdarrshhaltpptlvpcpeckamkpphtvcpecgyyagrkvlev

Sequence, based on observed residues (ATOM records): (download)

>2v495 (5:)
akhpvpkkktskarrdarrshhaltpptlvpcpeckamkpphtvcpecgyyagrkvlev

Chain '6':
Sequence, based on SEQRES records: (download)

>2v496 (6:)
masevriklllecteckrrnyateknkrntpnklelrkycpwcrkhtvhrevki

Sequence, based on observed residues (ATOM records): (download)

>2v496 (6:)
lllecteckrrnyateknkrntpnklelrkycpwcrkhtvhrevk

Chain '7':
Sequence; same for both SEQRES and ATOM records: (download)
```
>2v497 (7:)
mkrtwqpnrrkrakthgfrarmrtpggrkvlkrrrqkgrwrltpavrkr
```
Chain '8':
No sequence available.
Chain 'A':
No sequence available.
Chain 'B':
No sequence available.
Chain 'C':
No sequence available.
Chain 'D':
No sequence available.

Chain 'E':
Sequence, based on SEQRES records: (download)

>2v49E (E:)
mkgilgvkvgmtrifrddravpvtvilagpcpvvqrrtpekdgytavqlgflpqnpkrvn
rplkghfakagvepvrilreirdfnpegdtvtveifkpgervdvtgtskgrgfagvmkrw
nfaggpdshgahkihrhpgsignrktpgrvykgkkmaghygaervtvmnlevvdvipeen
lllvkgavpgpngglvivretkkaak

Sequence, based on observed residues (ATOM records): (download)

>2v49E (E:)
mkgilgvkvgmtrifrddravpvtvilagpcpvvqrrtpekdgytavqlgflpqnpkrvn
rplkghfakagvepvrilreirdfnpegdtvtveifkpgervdvtgtskgrgfagvmkrw
nfaggpdshgahkihrhpgsignrktpgrvykgkkmaghygaervtvmnlevvdvipeen
lllvkgavpgpngglvivretkkaa

Chain 'F':
Sequence, based on SEQRES records: (download)

>2v49F (F:)
mkevavyqipvlspsgrrelaadlpaeinphllwevvrwqlakrrrgtastktrgevays
grkiwpqkhtgrarhgdigapifvgggvvfgpkprdysytlpkkvrkkglamavadrare
gklllveafagvngktkeflawakeagldgsesvllvtgnelvrraarnlpwvvtlapeg
lnvydivrterlvmdldawevfqnriggea

Sequence, based on observed residues (ATOM records): (download)

>2v49F (F:)
mkevavyqipvlspsgrrelaadlpaeinphllwevvrwqlakrrrgtastktrgevays
grkiwpqkhtgrarhgdigapifvgggvvfgpkprdysytlpkkvrkkglamavadrare
gklllveafagvngktkeflawakeagldgsesvllvtgnelvrraarnlpwvvtlapeg
lnvydivrterlvmdldawevfqnrigg

Chain 'G':
No sequence available.

Chain 'H':
Sequence, based on SEQRES records: (download)

>2v49H (H:)
msrigrlpipvpkgvsvevapgrvkvkgpkgelevpvspemrvvveegvvrverpsderr
hkslhgltrtlianavkgvsegyskellikgigyrarlvgraleltvgfshpvvveppeg
itfevpeptrvrvsgidkqkvgqvaanirairkpsayhekgiyyagepvrlkpgkagakk

Sequence, based on observed residues (ATOM records): (download)

>2v49H (H:)
pkgvsvevapgrvkvkgpkgelevpvspemrvvveegvvrverpsderrhkslhgltrtl
ianavkgvsegyskellikgigyrarlvgraleltvgfshpvvveppegitfevpeptrv
rvsgidkqkvgqvaanirairkpsayhekgiyyagepvrl

Chain 'I':
No sequence available.

Chain 'N':
Sequence, based on SEQRES records: (download)

>2v49N (N:)
mktyvpkqveprwvlidaegktlgrlatkiatllrgkhrpdwtpnvamgdfvvvvnadki
rvtgkkleqkiytrysgypgglkkiplekmlathpervlehavkgmlpkgplgrrlfkrl
kvyagpdhphqaqrpeklev

Sequence, based on observed residues (ATOM records): (download)

>2v49N (N:)
mktyvpkqveprwvlidaegktlgrlatkiatllrgkhrpdwtpnvamgdfvvvvnadki
rvtgkkleqkiytrysgypgglkkiplekmlathpervlehavkgmlpkgplgrrlfkrl
kvyagpdhphqaqrpekle

Chain 'O':
No sequence available.

Chain 'P':
Sequence, based on SEQRES records: (download)

>2v49P (P:)
mklsdlrpnpgankrrkrvgrgpgsghgktatrghkgqksrsgglkdprrfeggrsttlm
rlpkrgmqgqvpgeikrpryqgvnlkdlarfegevtpellvragllkkgyrlkilgegea
kplkvvahafsksaleklkaaggepvllea

Sequence, based on observed residues (ATOM records): (download)

>2v49P (P:)
dlrpnpgankrrkrvgrgpgsghgktatrghkgqksrsgglkdprrfeggrsttlmrlpk
rgmqgqvpgeikrpryqgvnlkdlarfegevtpellvragllkkgyrlkilgegeakplk
vvahafsksaleklkaaggepvllea

Chain 'Q':
No sequence available.
Chain 'R':
No sequence available.
Chain 'S':
No sequence available.

Chain 'T':
Sequence, based on SEQRES records: (download)

>2v49T (T:)
mnrgaliklvesryvrtdlpefrpgdtvrvsykvkegnrtriqdfegivirirrngfntt
ftvrkvsygvgverifplhspliqkidivqrgrarraklyfirnlsdreirrklradrkr
idqdraaeraakeeaqkaqepkasqe

Sequence, based on observed residues (ATOM records): (download)

>2v49T (T:)
mnrgaliklvesryvrtdlpefrpgdtvrvsykvkegnrtriqdfegivirirrngfntt
ftvrkvsygvgverifplhspliqkidivqrgrarraklyfirnlsdreirrklradrkr
idqdraaeraakeeaqka

Chain 'U':
Sequence, based on SEQRES records: (download)

>2v49U (U:)
mpraktgvvrrrkhkkilklakgywglrsksfrkaretlfaagnyayahrkrrkrdfrrl
wivrinaacrqhglnystfihglkkagievdrknladlavrepqvfaelverakaaqg

Sequence, based on observed residues (ATOM records): (download)

>2v49U (U:)
praktgvvrrrkhkkilklakgywglrsksfrkaretlfaagnyayahrkrrkrdfrrlw
ivrinaacrqhglnystfihglkkagievdrknladlavrepqvfaelverakaaqg

Chain 'V':
Sequence; same for both SEQRES and ATOM records: (download)

>2v49V (V:)
mfaivktggkqyrvepglklrvekldaepgatvelpvlllggektvvgtpvvegasvvae
vlghgrgkkilvskfkakvqyrrkkghrqpytellikeirg

Chain 'W':
No sequence available.
Chain 'X':
No sequence available.

Chain 'Y':
Sequence, based on SEQRES records: (download)

>2v49Y (Y:)
mrvkmhvkkgdtvlvasgkykgrvgkvkevlpkkyavivegvnivkkavrvspkypqggf
iekeaplhaskvrpicpacgkptrvrkkflengkkirvcakcggaldtee

Sequence, based on observed residues (ATOM records): (download)

>2v49Y (Y:)
rvkmhvkkgdtvlvasgkykgrvgkvkevlpkkyavivegvnivkkavrvspkypqggfi
ekeaplhaskvrpicpacgkptrvrkkflengkkirvcakc

Chain 'Z':
Sequence, based on SEQRES records: (download)

>2v49Z (Z:)
meyrlkayyregekpsalrragklpgvmynrhlnrkvyvdlvefdkvfrqasihhvivle
lpdgqslptlvrqvnldkrrrrpehvdffvlsdepvemyvplrfvgtpagvraggvlqei
hrdilvkvsprnipefievdvsgleigdslhasdlklppgvelavspeetiaavvppedv
eklaeeaaaevaepevikkgkeeeee

Sequence, based on observed residues (ATOM records): (download)

>2v49Z (Z:)
yrlkayyregekpsalrragklpgvmynrhlnrkvyvdlvefdkvfrqasihhvivlelp
dgqslptlvrqvnldkrrrrpehvdffvlsdepvemyvplrfvgtpagvraggvlqeihr
dilvkvsprnipefievdvsgleigdslhasdlklppgvelavspeetiaavvpped