Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2430164Fold b.105: Penicillin-binding protein associated domain [69188] (1 superfamily)
    sandwich; 6 strands in 2 sheets
  4. 2430165Superfamily b.105.1: Penicillin-binding protein associated domain [69189] (3 families) (S)
  5. 2430195Family b.105.1.0: automated matches [231757] (1 protein)
    not a true family
  6. 2430196Protein automated matches [231758] (5 species)
    not a true protein

Species:

  1. 2430197Escherichia coli [TaxId:562] [232620] (4 PDB entries)
    1. Domains for 3it9:
      1. 2430206Domain d3it9a2: 3it9 A:259-352 [232621]
        Other proteins in same PDB: d3it9a1, d3it9b1, d3it9c1, d3it9d1
        automated match to d1hd8a1
        complexed with so4, suc
      2. 2430207Domain d3it9b2: 3it9 B:259-352 [232623]
        Other proteins in same PDB: d3it9a1, d3it9b1, d3it9c1, d3it9d1
        automated match to d1hd8a1
        complexed with so4, suc
      3. 2430208Domain d3it9c2: 3it9 C:259-352 [232625]
        Other proteins in same PDB: d3it9a1, d3it9b1, d3it9c1, d3it9d1
        automated match to d1hd8a1
        complexed with so4, suc
      4. 2430209Domain d3it9d2: 3it9 D:259-352 [239360]
        Other proteins in same PDB: d3it9a1, d3it9b1, d3it9c1, d3it9d1
        automated match to d3it9a2
        complexed with so4, suc
    2. Domains for 3ita:
      1. 2430202Domain d3itaa2: 3ita A:259-352 [246951]
        Other proteins in same PDB: d3itaa1, d3itab1, d3itac1, d3itad1
        automated match to d3it9a2
        complexed with aic, aix, so4
      2. 2430203Domain d3itab2: 3ita B:259-352 [246953]
        Other proteins in same PDB: d3itaa1, d3itab1, d3itac1, d3itad1
        automated match to d3it9a2
        complexed with aic, aix, so4
      3. 2430204Domain d3itac2: 3ita C:259-352 [246955]
        Other proteins in same PDB: d3itaa1, d3itab1, d3itac1, d3itad1
        automated match to d3it9a2
        complexed with aic, aix, so4
      4. 2430205Domain d3itad2: 3ita D:259-352 [246957]
        Other proteins in same PDB: d3itaa1, d3itab1, d3itac1, d3itad1
        automated match to d3it9a2
        complexed with aic, aix, so4
    3. Domains for 3itb:
      1. 2430198Domain d3itba2: 3itb A:259-352 [246959]
        Other proteins in same PDB: d3itba1, d3itbb1, d3itbc1, d3itbd1
        automated match to d3it9a2
        complexed with so4, suc
      2. 2430199Domain d3itbb2: 3itb B:259-352 [246961]
        Other proteins in same PDB: d3itba1, d3itbb1, d3itbc1, d3itbd1
        automated match to d3it9a2
        complexed with so4, suc
      3. 2430200Domain d3itbc2: 3itb C:259-352 [246963]
        Other proteins in same PDB: d3itba1, d3itbb1, d3itbc1, d3itbd1
        automated match to d3it9a2
        complexed with so4, suc
      4. 2430201Domain d3itbd2: 3itb D:259-352 [246965]
        Other proteins in same PDB: d3itba1, d3itbb1, d3itbc1, d3itbd1
        automated match to d3it9a2
        complexed with so4, suc
    4. Domain for 6ntz:
  2. 2430211Escherichia coli [TaxId:83333] [321360] (1 PDB entry)
  3. 2430213Haemophilus influenzae [TaxId:727] [231759] (1 PDB entry)
  4. 2430215Staphylococcus aureus [TaxId:1280] [352209] (2 PDB entries)
    1. Domains for 5txi:
      1. 2430216Domain d5txia2: 5txi A:316-383 [352210]
        Other proteins in same PDB: d5txia1, d5txib1
        automated match to d3huma2
        complexed with cl, gol, na, rb6, so4, zn
      2. 2430217Domain d5txib2: 5txi B:316-383 [352212]
        Other proteins in same PDB: d5txia1, d5txib1
        automated match to d3huma2
        complexed with cl, gol, na, rb6, so4, zn
    2. Domains for 6c39:
      1. 2430218Domain d6c39a2: 6c39 A:316-383 [359749]
        Other proteins in same PDB: d6c39a1, d6c39b1
        automated match to d3huma2
        complexed with na, so4, zn
      2. 2430219Domain d6c39b2: 6c39 B:316-383 [359748]
        Other proteins in same PDB: d6c39a1, d6c39b1
        automated match to d3huma2
        complexed with na, so4, zn
  5. 2430220Staphylococcus aureus [TaxId:93062] [352204] (11 PDB entries)
    1. Domains for 5tw4:
      1. 2430224Domain d5tw4a2: 5tw4 A:316-383 [352322]
        Other proteins in same PDB: d5tw4a1, d5tw4b1
        automated match to d3huma2
        complexed with ai8, cl, gol, na, zn; mutant
      2. 2430225Domain d5tw4b2: 5tw4 B:316-383 [352335]
        Other proteins in same PDB: d5tw4a1, d5tw4b1
        automated match to d3huma2
    2. Domains for 5tw8:
      1. 2430233Domain d5tw8a2: 5tw8 A:316-382 [352305]
        Other proteins in same PDB: d5tw8a1, d5tw8b1
        automated match to d3huma2
        complexed with ai8, na, zn
      2. 2430234Domain d5tw8b2: 5tw8 B:316-383 [352294]
        Other proteins in same PDB: d5tw8a1, d5tw8b1
        automated match to d3huma2
        complexed with ai8, na, zn
    3. Domains for 5tx9:
      1. 2430229Domain d5tx9a2: 5tx9 A:316-382 [352205]
        Other proteins in same PDB: d5tx9a1, d5tx9b1
        automated match to d3huma2
        complexed with na, rb6, zn; mutant
      2. 2430230Domain d5tx9b2: 5tx9 B:316-383 [352217]
        Other proteins in same PDB: d5tx9a1, d5tx9b1
        automated match to d3huma2
        complexed with na, rb6, zn; mutant
    4. Domains for 5ty2:
      1. 2430231Domain d5ty2a2: 5ty2 A:316-383 [353524]
        Other proteins in same PDB: d5ty2a1, d5ty2b1
        automated match to d3huma2
        complexed with cl, na, nff, zn; mutant
      2. 2430232Domain d5ty2b2: 5ty2 B:316-383 [353586]
        Other proteins in same PDB: d5ty2a1, d5ty2b1
        automated match to d3huma2
        complexed with cl, na, nff, zn; mutant
    5. Domains for 5ty7:
      1. 2430237Domain d5ty7a2: 5ty7 A:316-382 [353624]
        Other proteins in same PDB: d5ty7a1, d5ty7b1
        automated match to d3huma2
        complexed with na, nff, zn
      2. 2430238Domain d5ty7b2: 5ty7 B:316-382 [353616]
        Other proteins in same PDB: d5ty7a1, d5ty7b1
        automated match to d3huma2
        complexed with na, nff, zn
    6. Domains for 6c3k:
      1. 2430226Domain d6c3ka2: 6c3k A:316-383 [359784]
        Other proteins in same PDB: d6c3ka1, d6c3kb1
        automated match to d3huma2
        complexed with cl, na, zn; mutant
      2. 2430227Domain d6c3kb2: 6c3k B:316-383 [359842]
        Other proteins in same PDB: d6c3ka1, d6c3kb1
        automated match to d3huma2
        complexed with cl, na, zn; mutant
    7. Domains for 6dz8:
      1. 2430235Domain d6dz8a2: 6dz8 A:316-383 [361378]
        Other proteins in same PDB: d6dz8a1, d6dz8b1
        automated match to d3huma2
        complexed with zn; mutant
      2. 2430236Domain d6dz8b2: 6dz8 B:316-383 [361426]
        Other proteins in same PDB: d6dz8a1, d6dz8b1
        automated match to d3huma2
        complexed with zn; mutant
    8. Domain for 7kcv:
    9. Domain for 7kcw:
    10. Domain for 7kcx:
    11. Domain for 7kcy:

More info for Protein automated matches from b.105.1.0: automated matches

Timeline for Protein automated matches from b.105.1.0: automated matches: