Lineage for Species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3016464Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 3016465Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 3016466Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
    in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
  6. 3016467Protein DNA polymerase I (Klenow fragment) [56674] (3 species)
  7. 3016468Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (44 PDB entries)
    Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
    Uniprot Q45458 298-876 # 88% sequence identity

PDB entries in Species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]:

  1. Domain(s) for 1l3s:
  2. Domain(s) for 1l3t:
  3. Domain(s) for 1l3u:
  4. Domain(s) for 1l3v:
  5. Domain(s) for 1l5u:
  6. Domain(s) for 1lv5:
    1. 3016500Domain d1lv5a2: 1lv5 A:469-876 [84720]
      Other proteins in same PDB: d1lv5a1, d1lv5b1
      protein/DNA complex; complexed with dcp, mg, mn, so4
    2. 3016501Domain d1lv5b2: 1lv5 B:469-876 [84722]
      Other proteins in same PDB: d1lv5a1, d1lv5b1
      protein/DNA complex; complexed with dcp, mg, mn, so4
  7. Domain(s) for 1njw:
  8. Domain(s) for 1njx:
  9. Domain(s) for 1njy:
  10. Domain(s) for 1njz:
  11. Domain(s) for 1nk0:
  12. Domain(s) for 1nk4:
  13. Domain(s) for 1nk5:
  14. Domain(s) for 1nk6:
  15. Domain(s) for 1nk7:
  16. Domain(s) for 1nk8:
  17. Domain(s) for 1nk9:
  18. Domain(s) for 1nkb:
  19. Domain(s) for 1nkc:
  20. Domain(s) for 1nke:
  21. Domain(s) for 1u45:
  22. Domain(s) for 1u47:
  23. Domain(s) for 1u48:
  24. Domain(s) for 1u49:
  25. Domain(s) for 1u4b:
  26. Domain(s) for 1ua0:
  27. Domain(s) for 1ua1:
  28. Domain(s) for 1xc9:
  29. Domain(s) for 1xwl:
  30. Domain(s) for 2bdp:
  31. Domain(s) for 2hhq:
  32. Domain(s) for 2hhs:
  33. Domain(s) for 2hht:
  34. Domain(s) for 2hhu:
  35. Domain(s) for 2hhv:
  36. Domain(s) for 2hhw:
    1. 3016484Domain d2hhwa2: 2hhw A:469-876 [136517]
      Other proteins in same PDB: d2hhwa1, d2hhwd1
      automatically matched to d1l3sa2
      protein/DNA complex; complexed with d3t, mn, so4
    2. 3016485Domain d2hhwd2: 2hhw D:469-876 [136519]
      Other proteins in same PDB: d2hhwa1, d2hhwd1
      automatically matched to d1l3sa2
      protein/DNA complex; complexed with d3t, mn, so4
  37. Domain(s) for 2hhx:
  38. Domain(s) for 2hvh:
    1. 3016516Domain d2hvha2: 2hvh A:469-876 [136805]
      Other proteins in same PDB: d2hvha1, d2hvha3, d2hvhd1, d2hvhd3
      protein/DNA complex; complexed with dct, mn, so4
    2. 3016517Domain d2hvhd2: 2hvh D:469-876 [136807]
      Other proteins in same PDB: d2hvha1, d2hvha3, d2hvhd1, d2hvhd3
      protein/DNA complex; complexed with dct, mn, so4
  39. Domain(s) for 2hvi:
    1. 3016498Domain d2hvia2: 2hvi A:469-876 [136809]
      Other proteins in same PDB: d2hvia1, d2hvia3, d2hvid1, d2hvid3
      protein/DNA complex; complexed with dct, mg, so4
    2. 3016499Domain d2hvid2: 2hvi D:469-876 [136811]
      Other proteins in same PDB: d2hvia1, d2hvia3, d2hvid1, d2hvid3
      protein/DNA complex; complexed with dct, mg, so4
  40. Domain(s) for 2hw3:
  41. Domain(s) for 3bdp:
  42. Domain(s) for 3eyz:
  43. Domain(s) for 3ez5:
    1. 3016494Domain d3ez5a2: 3ez5 A:469-876 [232130]
      Other proteins in same PDB: d3ez5a1, d3ez5a3, d3ez5d1
      automated match to d2hvia2
      protein/DNA complex; complexed with dad, so4, zn
    2. 3016495Domain d3ez5d2: 3ez5 D:469-876 [232132]
      Other proteins in same PDB: d3ez5a1, d3ez5a3, d3ez5d1
      automated match to d2hvia2
      protein/DNA complex; complexed with dad, so4, zn
  44. Domain(s) for 4bdp:

More info for Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] from e.8.1.1 DNA polymerase I (Klenow fragment)

Timeline for Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] from e.8.1.1 DNA polymerase I (Klenow fragment):