SCOPe 2.04: Protein: Prion protein domain

Lineage for Protein: Prion protein domain

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.6: Prion-like [54097] (1 superfamily)
beta-alpha-beta-alpha(2); antiparallel beta-ribbon
Superfamily d.6.1: Prion-like [54098] (1 family)
Family d.6.1.1: Prion-like [54099] (3 proteins)
Protein Prion protein domain [54100] (14 species)

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [117768] (1 PDB entry)
Uniprot Q5S1W7 43-171
- Domain for 1xu0:
  - Domain d1xu0a_: 1xu0 A: [116032]
American elk (Cervus elaphus nelsoni) [TaxId:9864] [117765] (1 PDB entry)
SQ 67986 124-234
- Domain for 1xyw:
  - Domain d1xywa_: 1xyw A: [116234]
Cat (Felis catus) [TaxId:9685] [117769] (1 PDB entry)
Uniprot O18754 104-214
- Domain for 1xyj:
  - Domain d1xyja_: 1xyj A: [116229]
Chicken (Gallus gallus) [TaxId:9031] [117766] (1 PDB entry)
Uniprot P27177 132-248
- Domain for 1u3m:
  - Domain d1u3ma_: 1u3m A: [113000]
Cow (Bos taurus) [TaxId:9913] [54104] (4 PDB entries)
1. Domain for 1dwy:
  - Domain d1dwya_: 1dwy A: [37321]
2. Domain for 1dwz:
  - Domain d1dwza_: 1dwz A: [37322]
3. Domain for 1dx0:
  - Domain d1dx0a_: 1dx0 A: [37324]
4. Domain for 1dx1:
  - Domain d1dx1a_: 1dx1 A: [37323]
Dog (Canis familiaris) [TaxId:9615] [117770] (1 PDB entry)
Uniprot O46501 124-233
- Domain for 1xyk:
  - Domain d1xyka_: 1xyk A: [116230]
Golden hamster (Mesocricetus auratus) [TaxId:10036] [54102] (1 PDB entry)
- Domain for 1b10:
  - Domain d1b10a_: 1b10 A: [37306]
Human (Homo sapiens) [TaxId:9606] [54103] (18 PDB entries)
1. Domain for 1e1g:
  - Domain d1e1ga_: 1e1g A: [37310]
2. Domain for 1e1j:
  - Domain d1e1ja_: 1e1j A: [37320]
3. Domain for 1e1p:
  - Domain d1e1pa_: 1e1p A: [37307]
4. Domain for 1e1s:
  - Domain d1e1sa_: 1e1s A: [37316]
5. Domain for 1e1u:
  - Domain d1e1ua_: 1e1u A: [37308]
6. Domain for 1e1w:
  - Domain d1e1wa_: 1e1w A: [37318]
7. Domain for 1fkc:
  - Domain d1fkca_: 1fkc A: [37319]
    mutant
8. Domain for 1fo7:
  - Domain d1fo7a_: 1fo7 A: [37314]
    mutant
9. Domain for 1h0l:
  - Domain d1h0la_: 1h0l A: [76441]
10. Domain for 1hjm:
  - Domain d1hjma_: 1hjm A: [83489]
11. Domain for 1hjn:
  - Domain d1hjna_: 1hjn A: [83490]
12. Domain for 1i4m:
  - Domain d1i4ma_: 1i4m A: [66025]
    swapped dimer
    complexed with cd, cl
13. Domain for 1qlx:
  - Domain d1qlxa_: 1qlx A: [37311]
14. Domain for 1qlz:
  - Domain d1qlza_: 1qlz A: [37309]
15. Domain for 1qm0:
  - Domain d1qm0a_: 1qm0 A: [37317]
16. Domain for 1qm1:
  - Domain d1qm1a_: 1qm1 A: [37312]
17. Domain for 1qm2:
  - Domain d1qm2a_: 1qm2 A: [37315]
18. Domain for 1qm3:
  - Domain d1qm3a_: 1qm3 A: [37313]
Macropus eugenii [TaxId:9315] [255344] (1 PDB entry)
- Domain for 2kfl:
  - Domain d2kfla_: 2kfl A: [242501]
    automated match to d1u3ma_
Mouse (Mus musculus) [TaxId:10090] [54101] (4 PDB entries)
Uniprot P04925 120-231
1. Domain for 1ag2:
  - Domain d1ag2a_: 1ag2 A: [37305]
2. Domain for 1xyx:
  - Domain d1xyxa_: 1xyx A: [116235]
3. Domain for 1y15:
  - Domain d1y15a_: 1y15 A: [116328]
    mutant
4. Domain for 1y16:
  - Domain d1y16a_: 1y16 A: [240976]
    automated match to d1y15a_
    mutant
Pig (Sus scrofa) [TaxId:9823] [117771] (1 PDB entry)
Uniprot P49927 125-235
- Domain for 1xyq:
  - Domain d1xyqa_: 1xyq A: [116231]
Rabbit (Oryctolagus cuniculus) [TaxId:9986] [189522] (1 PDB entry)
- Domains for 3o79:
  1. Domain d3o79a_: 3o79 A: [182853]
    automated match to d1y2sa_
    complexed with cl, gol, na
  2. Domain d3o79b_: 3o79 B: [182854]
    automated match to d1y2sa_
    complexed with cl, gol, na
Red-eared slider turtle (Trachemys scripta) [TaxId:34903] [117767] (1 PDB entry)
Uniprot Q9I9C0 141-248
- Domain for 1u5l:
  - Domain d1u5la_: 1u5l A: [113042]
Sheep (Ovis aries) [TaxId:9940] [102729] (6 PDB entries)
Uniprot P23907 124-234 ! Uniprot P23907 122-234 ! Uniprot P23907 127-228
1. Domain for 1tpx:
  - Domain d1tpxa_: 1tpx A: [107189]
    Other proteins in same PDB: d1tpxb1, d1tpxb2, d1tpxc1, d1tpxc2
2. Domain for 1tqb:
  - Domain d1tqba_: 1tqb A: [107212]
    Other proteins in same PDB: d1tqbb1, d1tqbb2, d1tqbc1, d1tqbc2
3. Domain for 1tqc:
  - Domain d1tqca_: 1tqc A: [107217]
    Other proteins in same PDB: d1tqcb1, d1tqcb2, d1tqcc1, d1tqcc2
4. Domain for 1uw3:
  - Domain d1uw3a_: 1uw3 A: [100070]
    complexed with gsh, po4
5. Domain for 1xyu:
  - Domain d1xyua_: 1xyu A: [116232]
6. Domain for 1y2s:
  - Domain d1y2sa_: 1y2s A: [116406]

More info for Protein Prion protein domain from d.6.1.1: Prion-like

Timeline for Protein Prion protein domain from d.6.1.1: Prion-like:

Protein Prion protein domain from d.6.1.1: Prion-like first appeared (with stable ids) in SCOP 1.55, called Protein Prion protein domain from d.6.1.1: Prion protein domain
Protein Prion protein domain from d.6.1.1: Prion-like appears in SCOPe 2.03
Protein Prion protein domain from d.6.1.1: Prion-like appears in SCOPe 2.05
Protein Prion protein domain from d.6.1.1: Prion-like appears in the current release, SCOPe 2.08